PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU27018.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 612aa    MW: 67126.4 Da    PI: 4.7252
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU27018.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.93.6e-1102446112373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  + L+ecA+  +++++e+a + L rl+e +s++gdp++R+ +yf+eAL +rl++ +++   ++ +++      +e + ++k++++++P+ kf+hltaNq
  PHU27018.1 244 LKSLVECARL-ADSEHENAAKSLIRLKESVSQQGDPTERVGFYFLEALYNRLSEFQEQKTPTIFCTSP-----EELTLSYKAYNDACPYSKFAHLTANQ 336
                 578******5.5567888889999******************************66555555555544.....578899******************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 aIlea+e+++r+Hi+Df+i +G+QW+a+lqaLa+R++g+p s+Ri g+ s   g   + +l +tg+rL++fA+ l+++fef++ + + +++l+ +++r+
  PHU27018.1 337 AILEATEKATRIHIVDFGIVHGIQWAAFLQALATRSAGKPvSVRISGIPSVVLGnsPAAALLATGNRLRDFAKLLDLNFEFEP-ILTPVQELDGSSFRI 434
                 ************************************88777*********877788999************************.799************ PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +p+E laVn++lql++lldes    +   + L+l ksl+P +v++ e e+++n+  Fl+rf +al+yys++f+sl+ +l r+s er+ vEr +lgr+i 
  PHU27018.1 435 DPDEILAVNFMLQLYNLLDESNVGVK---TALNLAKSLNPSIVTLGEYEVNLNNVGFLQRFKNALKYYSTIFESLDPNLTRDSPERVQVERLILGRRIA 530
                 ******************88887777...9********************************************************************* PP

        GRAS 296 nvvac.egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                  +v    g  rre +e +e+Wre +e aGFk+v+ls++a++qak ll +++ s  + + ++   ++ l Wkd+pL++vS+W
  PHU27018.1 531 GAVGEdDGGTRRECMEDKEHWRELMEGAGFKAVTLSHYAMSQAKILLWNYNySSSFGLIDSAPGFLsLAWKDKPLLTVSSW 611
                 ***8625677*****************************************9999999888777766************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    
MAYMCTDSGN LMAIAQQVIK QKQQQEQLQQ QEQQQHQQQF LGVNPLCMNP WTTTHQSLTN  60
SPTTLGYGLT GSGFADPFQV AGGPDGGEPG FQFPNLEHHS TGFRFADFGG GPGGEFDSDE  120
WMESLMGGGD SAGSSNLQSG CDAWQTSSEF TTLYGDPFSS CPNRLSIGSS PPPPPPPPPS  180
DLIFSETQKN LSSLQPQTSQ WVPPSSSPLP VVQLPCKESK VVSVKNPVDV PCSSPESFTS  240
NPLLKSLVEC ARLADSEHEN AAKSLIRLKE SVSQQGDPTE RVGFYFLEAL YNRLSEFQEQ  300
KTPTIFCTSP EELTLSYKAY NDACPYSKFA HLTANQAILE ATEKATRIHI VDFGIVHGIQ  360
WAAFLQALAT RSAGKPVSVR ISGIPSVVLG NSPAAALLAT GNRLRDFAKL LDLNFEFEPI  420
LTPVQELDGS SFRIDPDEIL AVNFMLQLYN LLDESNVGVK TALNLAKSLN PSIVTLGEYE  480
VNLNNVGFLQ RFKNALKYYS TIFESLDPNL TRDSPERVQV ERLILGRRIA GAVGEDDGGT  540
RRECMEDKEH WRELMEGAGF KAVTLSHYAM SQAKILLWNY NYSSSFGLID SAPGFLSLAW  600
KDKPLLTVSS WH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein