PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU26448.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LSD

Protein Properties

Length: 387aa MW: 42306.6 Da PI: 4.6907

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU26448.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.4	4.7e-13	298	322	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYP GA++V+C++C+tV PHU26448.1 298 CGSCRQLLSYPQGAKLVKCPCCQTV 322 ************************9 PP
2	zf-LSD1	44.4	2.7e-14	336	360	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC++C ++ PHU26448.1 336 CGGCAVLLMYPYGAPSVRCSSCRHM 360 **********************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MEEKLSKIEN QQEEEEDEGP PPGFDSIALP SQHSNVVVDD DDEGPPPGWP SIPQQNNQQL 60 LQTTDVEMES KEHELEDDED GPPPGWNTVI PLKKMRSSPP TIAAVTCDIE MKKEKVIEDE 120 DNGPPPGWKL TPQLPMLQTS TPASGTHGAP LADIEMEKKE KVIEDEDNGP PPGWQLTPQL 180 PPLQTSTPAS GTEGAALADV EMVSKQDCGV EKEGRTLGSE SIPMTRHSSP YTPPPQSSSS 240 VASSEMEMGS KQEGTKNEEV RPQIEKQPMP HLRQMKPIMP QSSSHAATVS AEMGQMVCGS 300 CRQLLSYPQG AKLVKCPCCQ TVNLVLEAQY VGQVKCGGCA VLLMYPYGAP SVRCSSCRHM 360 TKIGAHNRRP PQSVQQPRRR HPSYQVR

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MEEKLSKIEN QQEEEEDEGP PPGFDSIALP SQHSNVVVDD DDEGPPPGWP SIPQQNNQQL  60
LQTTDVEMES KEHELEDDED GPPPGWNTVI PLKKMRSSPP TIAAVTCDIE MKKEKVIEDE  120
DNGPPPGWKL TPQLPMLQTS TPASGTHGAP LADIEMEKKE KVIEDEDNGP PPGWQLTPQL  180
PPLQTSTPAS GTEGAALADV EMVSKQDCGV EKEGRTLGSE SIPMTRHSSP YTPPPQSSSS  240
VASSEMEMGS KQEGTKNEEV RPQIEKQPMP HLRQMKPIMP QSSSHAATVS AEMGQMVCGS  300
CRQLLSYPQG AKLVKCPCCQ TVNLVLEAQY VGQVKCGGCA VLLMYPYGAP SVRCSSCRHM  360
TKIGAHNRRP PQSVQQPRRR HPSYQVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-30	LSD family protein