PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU26370.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 504aa MW: 57480.3 Da PI: 10.5992

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU26370.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.5	7.2e-09	13	49	1	38
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 + +W t+E+++l av+++G+++W+ +a+++ Rt + PHU26370.1 13 KVNWGTWEELILGSAVRRHGTRDWNVVASELR-ARTIY 49 579*****************************.77654 PP

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence
MMEEEKTRVG PRKVNWGTWE ELILGSAVRR HGTRDWNVVA SELRARTIYP HDFTPEACKA 60 RYEELRKRYS GCTAWFEELR KRRVEELKRE LVRSESSIGS LQLKIESLKA ERERSGQIDY 120 GLSHTESPAP LTKSEDIEFS VKEEAKDGLS AGSFTLDIRT NQSPESQVPA IPSATETVVK 180 LEPLESWEQD KAPSTSKVTE AANGNGGAVR KRRGKRRRKD SVWDAKEGSI EDSDNVCSTS 240 LASTSHCKEI LTSCDQSIRH SAVSNHRGGL SRFRNDDLMR IFNSITQHEA AMVFRHRLDS 300 QKRARYKKII RRHMDIETAR SRLANWSIKT PGELFRDFLL LANNAMVFYS KRTREYKSAM 360 ALRDIVTKVY REHYKDSYYK ATSSLLPWPT IGNPPGKPRS VRPRPSKDKL QAKYGNNVKD 420 IIGGTLGKQN HKPVDADSKV PLQSFLSAKK GFKRPGKIKC GSTIETVNPQ PKVQAKEPSQ 480 HNIKVKKDHR VKPVTKERKR ARQK

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence

MMEEEKTRVG PRKVNWGTWE ELILGSAVRR HGTRDWNVVA SELRARTIYP HDFTPEACKA  60
RYEELRKRYS GCTAWFEELR KRRVEELKRE LVRSESSIGS LQLKIESLKA ERERSGQIDY  120
GLSHTESPAP LTKSEDIEFS VKEEAKDGLS AGSFTLDIRT NQSPESQVPA IPSATETVVK  180
LEPLESWEQD KAPSTSKVTE AANGNGGAVR KRRGKRRRKD SVWDAKEGSI EDSDNVCSTS  240
LASTSHCKEI LTSCDQSIRH SAVSNHRGGL SRFRNDDLMR IFNSITQHEA AMVFRHRLDS  300
QKRARYKKII RRHMDIETAR SRLANWSIKT PGELFRDFLL LANNAMVFYS KRTREYKSAM  360
ALRDIVTKVY REHYKDSYYK ATSSLLPWPT IGNPPGKPRS VRPRPSKDKL QAKYGNNVKD  420
IIGGTLGKQN HKPVDADSKV PLQSFLSAKK GFKRPGKIKC GSTIETVNPQ PKVQAKEPSQ  480
HNIKVKKDHR VKPVTKERKR ARQK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	83	RKRYSGCTAWFEELRKRR
2	210	220	RKRRGKRRRKD
3	212	222	RKRRGKRRRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42150.1	1e-12	MYB_related family protein