PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU25308.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 105aa MW: 11472.9 Da PI: 8.9003 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 21.9 | 2.3e-07 | 5 | 45 | 4 | 44 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +++ r + f k + ++KKA LS+ ++a+va + fss g PHU25308.1 5 DSEAARFTAFEKGIKSLIKKADMLSITTGARVAFVTFSSYG 45 6788899*******************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence |
MKVLDSEAAR FTAFEKGIKS LIKKADMLSI TTGARVAFVT FSSYGIYAYD SSKNINEIID 60 NFLSHRKNQT TSTNVVALLP SLSGESYMMN NANVGPNNEK ASPDN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 2e-07 | MIKC_MADS family protein |