PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU24488.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 288aa    MW: 31619.1 Da    PI: 7.9856
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU24488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.23.3e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     + +WT +E++ l+ +v+++G+g+Wk I r         +R+  ++k++w++
       PHU24488.1  5 KVKWTSDEEDALKAGVAKHGTGRWKNILRDPDfasllSNRSNIDLKDKWRN 55
                     579**********************************9************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MGNPKVKWTS DEEDALKAGV AKHGTGRWKN ILRDPDFASL LSNRSNIDLK DKWRNMSIYP  60
AGQGSKDKSR VARARPMAID ALVPSTAQNV TPIASAFEPS LAQSVPAITS AFENEAIDDP  120
PKNSQEGLHL SNDMIFEALS SMKGSNGSDL GAIVGFIEQR HEVPQHARRL LTTKLRRLVL  180
QGKLEKVENC YKMKDATSET KIPTPKQKHV RSWPVPNSAV KVSCGTTEEA ARIAAEKIVD  240
AEHKCFLEVE AIKDAEVTSK MAEEAETMLL LVKEIYEQCS RGGVVLLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-64MYB_related family protein