PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU24428.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 573aa    MW: 63452.9 Da    PI: 5.3636
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU24428.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4355.5e-1331985681374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv++L++cAea+++++++la+alL+++  la +++ +m+++a yf+ AL+++++r    ly   pps+ ++   ++ l +   f+e++P+lkf+h+taN
  PHU24428.1 198 LVHTLMTCAEAIQQEEMKLADALLKQIAFLAVSQAGAMRKVAMYFAYALERKIYR----LY---PPSNPNDFAFTDLLEM--HFYETCPYLKFAHFTAN 287
                 689****************************************************....66...4444443334555444..5**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                 qaIlea++++++vH+iDf+++qG+QWpaLlqaLa Rp+gpps+R+Tg+g+p+++    ++e l+e+g+rL ++Ae+++v+fef+ +va++++dl+ + +
  PHU24428.1 288 QAILEAFANKTKVHVIDFSMKQGMQWPALLQALALRPSGPPSFRLTGIGPPSHDnnsnNAEHLQEVGWRLGQLAESIKVEFEFRGFVANSMADLNASIF 386
                 ***************************************************999999999*************************************** PP

        GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak.....lpreseerikvEre 288
                 ++++gE++aVn++++lh+ll++++ +e+     L++vk+l+P++++vveqea+hn++ F +rf+e+l+yys+lfdsle +     l++ s++++ ++++
  PHU24428.1 387 DIREGETVAVNSIFELHQLLARPGGIEK----GLSVVKDLKPDIFTVVEQEANHNGPVFIDRFTESLHYYSTLFDSLEGGsgggeLGPVSDQDKLMSEV 481
                 ***************************9....*********************************************9886777788889********* PP

        GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +lgr+i+n+v+ceg +r+erhetl++Wr+r+++a Fkpv+l+++a kqa++ll+ ++ + gyrvee++g+l+lgW++rpL+++SaW+
  PHU24428.1 482 YLGRQICNLVSCEGVDRVERHETLAQWRRRFNTACFKPVHLGSNAFKQASMLLALFAgGCGYRVEENNGCLMLGWHTRPLIATSAWK 568
                 *********************************************************99***************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    
MKRDKTMPCD QRTFSGKGKM MKEEEQDGGG VDELLAVLGY EVKESDKAEV AQKLEQLERV  60
MGNVQQDNLT FLASDTVHYN PSDLSTWIQS MISELNPQHP FTPNNHPSSL TPPPPQVYDD  120
DSSFDSDLTA IPGKAVFPQI DGPLLNPQSK RFKPSTTEVS SSSSSSSSIC IWGGGGLRPA  180
ELARPVVLTD SQDNGVRLVH TLMTCAEAIQ QEEMKLADAL LKQIAFLAVS QAGAMRKVAM  240
YFAYALERKI YRLYPPSNPN DFAFTDLLEM HFYETCPYLK FAHFTANQAI LEAFANKTKV  300
HVIDFSMKQG MQWPALLQAL ALRPSGPPSF RLTGIGPPSH DNNSNNAEHL QEVGWRLGQL  360
AESIKVEFEF RGFVANSMAD LNASIFDIRE GETVAVNSIF ELHQLLARPG GIEKGLSVVK  420
DLKPDIFTVV EQEANHNGPV FIDRFTESLH YYSTLFDSLE GGSGGGELGP VSDQDKLMSE  480
VYLGRQICNL VSCEGVDRVE RHETLAQWRR RFNTACFKPV HLGSNAFKQA SMLLALFAGG  540
CGYRVEENNG CLMLGWHTRP LIATSAWKLN SVC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein