PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU22710.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 893aa MW: 100537 Da PI: 6.8368

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU22710.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47	5.8e-15	449	493	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G W+ I +++g +t+ q++s+ qk+ PHU22710.1 449 REKWTEEEHQRFLEALKLYGRA-WRQIEEYVG-SKTAIQIRSHAQKF 493 789***************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 893 aa Download sequence
MTNGKRAEKN KDIMELKDDV LVWEIISRLP LKLAVQCKVL NKDIKGRISD PEFLRTWFRR 60 QEDPSTELIY TLNGRHRSLH KITLYPIPNT QMETPLSCDI EILASCNGLI LIDFDRVTKY 120 CVFNPLTGEH QLIPYPLMPS NRLHSMGFAV DYPDSDQYKL VTISERVKYS HRFYKFSLLS 180 SQQPGFWHEI QQETSSFRPF PEGNPPVYWC GSLYWLRCEG SVVAFDTRRQ ASRVIEARFI 240 PQYDFKYGNI STGNNMRLGT AQGVLTLACI FRRLIVLATY DNARSSWTVT HTVDNFISRM 300 SGFVAGFPVW IDSKQVSFLM ERPWVVTHYW DLYEYDTEIN GYRKGAEWHS VGYPMYYFHP 360 TLASVHQAPF KNVEADDLLY IAAKLNYIRG FIIEGTSQFQ NQAEGAWQGA SSVNSSKLEI 420 VATQEKAPTC LANKNALKVR KPYTITKQRE KWTEEEHQRF LEALKLYGRA WRQIEEYVGS 480 KTAIQIRSHA QKFFAKVARD SVNDGDESLN AIDIPPPRPK KKPLHPYPRK MVDSPVANKA 540 VSGQPESSPS PNVSGRVSRS PDSVLSAIGS GVSEYPVAEQ QNSRFSPASC TTDVHTANII 600 SAENDDESMT SNSSTVEEVH VELKPISAST SPIANSDMVI PLEACNLSAL PCYLGCTLTS 660 GLYVPLQECD IVHRENSCNG EKLAVEAPSA SIKLFGQTVF IPDANNLALR APYNCNSLPS 720 KSTEKEIKIS SEDVLHSFQA NQANSQFMLA MVPGNMIPPA SWLSHNMLEN NPEITTVFPT 780 TVSWWSWYQD LVNRSILSCD QKAMETAVHC QGPKDEEPQR EGSSTGSSIG SASEVDDGNR 840 SSETAESKCT AKSYKWNNSK GFVPYKRCLA ERDDKSSGAV LEERESQRVR VCS

Sequence ? help Back to Top

Protein Sequence Length: 893 aa Download sequence

MTNGKRAEKN KDIMELKDDV LVWEIISRLP LKLAVQCKVL NKDIKGRISD PEFLRTWFRR  60
QEDPSTELIY TLNGRHRSLH KITLYPIPNT QMETPLSCDI EILASCNGLI LIDFDRVTKY  120
CVFNPLTGEH QLIPYPLMPS NRLHSMGFAV DYPDSDQYKL VTISERVKYS HRFYKFSLLS  180
SQQPGFWHEI QQETSSFRPF PEGNPPVYWC GSLYWLRCEG SVVAFDTRRQ ASRVIEARFI  240
PQYDFKYGNI STGNNMRLGT AQGVLTLACI FRRLIVLATY DNARSSWTVT HTVDNFISRM  300
SGFVAGFPVW IDSKQVSFLM ERPWVVTHYW DLYEYDTEIN GYRKGAEWHS VGYPMYYFHP  360
TLASVHQAPF KNVEADDLLY IAAKLNYIRG FIIEGTSQFQ NQAEGAWQGA SSVNSSKLEI  420
VATQEKAPTC LANKNALKVR KPYTITKQRE KWTEEEHQRF LEALKLYGRA WRQIEEYVGS  480
KTAIQIRSHA QKFFAKVARD SVNDGDESLN AIDIPPPRPK KKPLHPYPRK MVDSPVANKA  540
VSGQPESSPS PNVSGRVSRS PDSVLSAIGS GVSEYPVAEQ QNSRFSPASC TTDVHTANII  600
SAENDDESMT SNSSTVEEVH VELKPISAST SPIANSDMVI PLEACNLSAL PCYLGCTLTS  660
GLYVPLQECD IVHRENSCNG EKLAVEAPSA SIKLFGQTVF IPDANNLALR APYNCNSLPS  720
KSTEKEIKIS SEDVLHSFQA NQANSQFMLA MVPGNMIPPA SWLSHNMLEN NPEITTVFPT  780
TVSWWSWYQD LVNRSILSCD QKAMETAVHC QGPKDEEPQR EGSSTGSSIG SASEVDDGNR  840
SSETAESKCT AKSYKWNNSK GFVPYKRCLA ERDDKSSGAV LEERESQRVR VCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.1	4e-38	MYB_related family protein