PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU21472.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 279aa    MW: 31053.9 Da    PI: 4.8382
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU21472.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS109.44.9e-34562642207
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl....fse..vsPilkf 93 
                  elL + A+ v+++++ + ++l +  ++ as +g+++q+++ yf+ AL +r+ r++ ++  + +   +  +n ++e ++   l    f +  +  + + 
  PHU21472.1  56 AELLQASAQLVATRSFDRGRKLPSLCNQSASATGTAVQKIVYYFADALLHRIDRETGKIPFTGEEDMNVYSNdTEEFIMD--LepaeFAKrpLYAYRQA 152
                 5789999***********************************************66555544433322222223333333..33465543225567899 PP

        GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg.ppslRiTgvgspesgskeeleetgerLakfAeel..gvpfefnvlvakrledl 189
                 +++t  qaIl+++ ++++vH iD++++ G QW +++q  a+R+e    +l+iT+vg+    s++ +e +g+rL+ fA e+  +v+f f++ v+++l++l
  PHU21472.1 153 TQFTGIQAILDSTITAKKVHLIDLSVKSGSQWTTFMQVVADRDEFlLEHLKITAVGR----STKLMEDVGRRLSAFAPETlqNVSFCFKT-VVSDLKNL 246
                 9******************************************66267*********....99**************8764599999999.7999**** PP

        GRAS 190 eleeLrvkpgEalaVnlv 207
                 e+++++v+ +E++aV + 
  PHU21472.1 247 ETDSFEVEADEVVAVYSD 264
                 ***************875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MASSSSHARN KKKANRCGDH AEGRQGSLRQ DLNESSFQLS TNSGVSPELV QDVDLAELLQ  60
ASAQLVATRS FDRGRKLPSL CNQSASATGT AVQKIVYYFA DALLHRIDRE TGKIPFTGEE  120
DMNVYSNDTE EFIMDLEPAE FAKRPLYAYR QATQFTGIQA ILDSTITAKK VHLIDLSVKS  180
GSQWTTFMQV VADRDEFLLE HLKITAVGRS TKLMEDVGRR LSAFAPETLQ NVSFCFKTVV  240
SDLKNLETDS FEVEADEVVA VYSDTILWTV LPWPNVLES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-16GRAS family protein