PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU19646.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 509aa    MW: 56720.6 Da    PI: 6.054
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU19646.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS339.36.8e-1041235021373
        GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal...ppsetseknsseelaalklfsevsPilkf 93 
                 lv+lL+++Aea+s  +++  la+ +L rl+elasp+g ++m+Rlaa+ft AL+a l +  s++ +a    +p+ ++e+++ ++laa++l++++sP++kf
  PHU19646.1 123 LVHLLMAAAEALSGVNKSreLARVILVRLKELASPNGaTNMERLAAHFTDALQALLDGAASGTLHAKhmfSPNYKDEQHQGDVLAAFQLLQDMSPFVKF 221
                 68***********85554449****************99*****************9977777655411266666666699****************** PP

        GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                 +h+taNqaIle+v++++rvHi+D+di++G+QW++L+qa+ sR++gpp  +lRiT+++++ sg  s  +++etg+rL+ fA+++g pf+f+    ++ e+
  PHU19646.1 222 GHFTANQAILESVAHDRRVHIVDYDIMEGIQWASLMQAFVSRKDGPPtpHLRITALSRSGSGrrSFGTVQETGRRLTAFAASIGQPFSFHHCRLDSDET 320
                 *******************************************776556*********888899999************************9999**** PP

        GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikv 285
                 +++ +L++ +gEal++n++l+l ++  +  ++     ++L+  k+l+P++v++ve+e+    ++e F+ rf+++l++ysal+dslea++p +s++r+ v
  PHU19646.1 321 FKPTNLKLVRGEALIINCMLHLPHFSYRASDS---VASFLSGSKNLNPRLVTLVEEEIRPigEEEGFVGRFMDTLHHYSALYDSLEAGFPLQSRARTLV 416
                 ************************98554444...459*******************987767889********************************* PP

        GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
                 Er++l+++i+  +a   + r+e+++   +W e+l+++GF + ++s  + +qaklll  ++ dgyrvee   + lvlgWk+r+L+s+S W
  PHU19646.1 417 ERVFLRPHITGSLARIYRVREEDER--YSWGEWLGAVGFCKSNISFANHCQAKLLLGLFN-DGYRVEEIgTNKLVLGWKSRRLFSASIW 502
                 ******************9877776..89*******************************.******9768999*************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    
MAMMVDETIP DFDYYGSLST TTTTTATTTT SSSENDHDHG CTWNDWSPVL DWGAFSGGDN  60
FQDLIESMIQ GHNSTGGVKV NFHPSVNYFW KSISSEDSAG LIEEDYLEDS NNNQSADING  120
LKLVHLLMAA AEALSGVNKS RELARVILVR LKELASPNGA TNMERLAAHF TDALQALLDG  180
AASGTLHAKH MFSPNYKDEQ HQGDVLAAFQ LLQDMSPFVK FGHFTANQAI LESVAHDRRV  240
HIVDYDIMEG IQWASLMQAF VSRKDGPPTP HLRITALSRS GSGRRSFGTV QETGRRLTAF  300
AASIGQPFSF HHCRLDSDET FKPTNLKLVR GEALIINCML HLPHFSYRAS DSVASFLSGS  360
KNLNPRLVTL VEEEIRPIGE EEGFVGRFMD TLHHYSALYD SLEAGFPLQS RARTLVERVF  420
LRPHITGSLA RIYRVREEDE RYSWGEWLGA VGFCKSNISF ANHCQAKLLL GLFNDGYRVE  480
EIGTNKLVLG WKSRRLFSAS IWNTTDTDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-148GRAS family protein