PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU18799.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 132aa MW: 15254.3 Da PI: 10.2371 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 26.5 | 8.5e-09 | 16 | 64 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +ie + r+ tfsk r g+ KKA+ L +++ +++ s+t+k+y + PHU18799.1 16 KIEKDAHRYSTFSKQRSGLYKKASQLVRENNVDLGIVLTSPTDKVYAFV 64 59999*****************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence |
MEGKKTTGRR KIPLVKIEKD AHRYSTFSKQ RSGLYKKASQ LVRENNVDLG IVLTSPTDKV 60 YAFVHPTSNA VIDRFINLKT DFGDRFVAEN SRDKVNQLND RLNELDKREE IAKESLLALN 120 EMDKTREKSL DR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 4e-22 | M-type_MADS family protein |