PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU18496.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 453aa MW: 51161.2 Da PI: 4.5938

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU18496.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.6	2.9e-18	22	66	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEde +v+++ lG++ W++Ia+ ++ gRt++++k++w++ PHU18496.1 22 RGKFTAEEDETIVKLHSTLGNR-WSLIAQDLP-GRTDNEIKNYWNSN 66 89******************.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
LLRCGKSCRL RWTNYLRPNL KRGKFTAEED ETIVKLHSTL GNRWSLIAQD LPGRTDNEIK 60 NYWNSNLRRR LYSFRNFKEL IKTTTNVPKI AVDGDSDESL RKQDTSTMSK EGSIESLLPE 120 DNIVVDRGST RKNRSLCVGS NEGATWSEGD STESLLPKNC TVDIGSMRKP YSSCPRGKDD 180 VSWYRGGSTE SLLLENIEIN FACEENSIGS LLMENCSCPG GRDDTSWSEE GGSFKSLLLE 240 NIETNFSCPK GTCNATWSEG GSVEFFSLEN CAVDLGSNRE NKSDKGGSIE YLLTGNYTVD 300 IGFNRETNSS SCPRGNAEAM WYEEGSSIES SSTESYIVDL DFLTQSPTRK TEELAMQQHE 360 HHAKSKIHEP NEEGEAKNIK DIIHDSPKQQ LCQGICSIGE QEQQIQGPHE QNEENEIVIQ 420 QKHNDCLHNF DNNNWSNINF DYFLEDEYGI WNH

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

LLRCGKSCRL RWTNYLRPNL KRGKFTAEED ETIVKLHSTL GNRWSLIAQD LPGRTDNEIK  60
NYWNSNLRRR LYSFRNFKEL IKTTTNVPKI AVDGDSDESL RKQDTSTMSK EGSIESLLPE  120
DNIVVDRGST RKNRSLCVGS NEGATWSEGD STESLLPKNC TVDIGSMRKP YSSCPRGKDD  180
VSWYRGGSTE SLLLENIEIN FACEENSIGS LLMENCSCPG GRDDTSWSEE GGSFKSLLLE  240
NIETNFSCPK GTCNATWSEG GSVEFFSLEN CAVDLGSNRE NKSDKGGSIE YLLTGNYTVD  300
IGFNRETNSS SCPRGNAEAM WYEEGSSIES SSTESYIVDL DFLTQSPTRK TEELAMQQHE  360
HHAKSKIHEP NEEGEAKNIK DIIHDSPKQQ LCQGICSIGE QEQQIQGPHE QNEENEIVIQ  420
QKHNDCLHNF DNNNWSNINF DYFLEDEYGI WNH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	5e-35	MYB family protein