PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU18252.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 725aa    MW: 82872.8 Da    PI: 6.6358
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU18252.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS257.83.8e-791484961349
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevsPilkfshl 96 
                 lve Ll+ Ae vs+++  +a+++L++  + +s++g+p++Rla yf +AL+ r+ r ++   +k + +++  +++    +   ++ + ++  P+ +++++
  PHU18252.1 148 LVENLLASAEKVSQKQYDRARRILNECDKFCSNTGNPVHRLAYYFSQALRDRIDRdTGRDSSKDIGMNRLVPMEhlLMNLDLSMIAAHQNIPLSQVTQF 246
                 5789***************************************************777888888866555555544333333344478899******** PP

        GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                 +  qaI + v ++++vHiiD+di+ G+QW  L+qaL + +    ++  +lRiT++     + ++++e t+erL +fA +l++pf+fn+++++++ +l+ 
  PHU18252.1 247 AGVQAIINHVGESKKVHIIDLDIGCGMQWTILMQALYTHQcgceSSLKHLRITALCT---KLRHKIEDTRERLMDFAVSLNLPFSFNIVMVEDVMKLKQ 342
                 *************************************99988877788*******99...57999********************************** PP

        GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                 e+++++ +Ea+a+   + l+r+l+++++l+s    +++++++++P+ ++v+e ea+hns+ F++rf+eal +y a+fdsle  +  ++++r+ +E e l
  PHU18252.1 343 EDFEIDDEEAIAIFARYILMRMLAQPAKLDS----LMRVIRGINPRAMIVIEVEANHNSPAFVDRFVEALFFYGAFFDSLEDCMRYDERNRTAIESEHL 437
                 ***********************99999999....**************************************************************** PP

        GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                 +r i+++va+eg+er+ rh t+  Wr+ + + G+++++ls +   qa+l lr+++ +g 
  PHU18252.1 438 SRGIRSIVATEGEERTIRHVTVDVWRAFFARYGMEEMELSMSSLYQANLGLRRCPHRGR 496
                 ******************************************************98874 PP
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    
MFHFDQSELN SSESNEMNLD YDFVSLDKWD FNVIPLQHQS NVDETKKISG SKLPSVFKIL  60
KEYDTIRFKR SKTDKKIITN SECIKLSVTD KKIITNSECI KLSVDEILRL GAEKFIQSCT  120
IHGDREACML FASSFLGLSE DDTRNVALVE NLLASAEKVS QKQYDRARRI LNECDKFCSN  180
TGNPVHRLAY YFSQALRDRI DRDTGRDSSK DIGMNRLVPM EHLLMNLDLS MIAAHQNIPL  240
SQVTQFAGVQ AIINHVGESK KVHIIDLDIG CGMQWTILMQ ALYTHQCGCE SSLKHLRITA  300
LCTKLRHKIE DTRERLMDFA VSLNLPFSFN IVMVEDVMKL KQEDFEIDDE EAIAIFARYI  360
LMRMLAQPAK LDSLMRVIRG INPRAMIVIE VEANHNSPAF VDRFVEALFF YGAFFDSLED  420
CMRYDERNRT AIESEHLSRG IRSIVATEGE ERTIRHVTVD VWRAFFARYG MEEMELSMSS  480
LYQANLGLRR CPHRGRTRTN DVRIGSSISY PPSFIQSNST GCFEGDHSRC IVVEIGIVVY  540
DEEPNKDTIL YSHDTLTIDE VYDALFSKKK LKHLVNGSET LGDGLIIRER NLERNSGGDD  600
RNRSKSRNRN KTFFYGNSKP YEDCILDSAC TFHMCRNRDW FIIYETVPKG VVLMKNNTPY  660
KIDGIGTIRI KMFDGVMRTL GDVQYVPNLK RILISLSTLD LNGYSYSGEC GVLKVTEGAL  720
VVMNG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-40GRAS family protein