PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU17797.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 394aa MW: 45253.8 Da PI: 8.569

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU17797.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	149.2	2.7e-46	114	256	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec...eaesssssasnsss 87 +gkkdrhski+T++g RdRRvRls+++a++fFdLqd+LGfdk+sktieWL++ ++ aikel ++ + +++ssss+++n+s PHU17797.1 114 TGKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDMLGFDKASKTIEWLFNRSNNAIKELSENiqpkeysdgnK------ItitSNNSSSSEGKNDSL 206 79************************************************************55554333320......233344444555554444 PP TCP 88 g.....kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133 ++ + ++k++ s+ + n++k es +karararert+ekm+ik PHU17797.1 207 MsefeeNSING--RKEKEKLSEMVQDNPHKrESMEKARARARERTKEKMMIK 256 45553222222..333333333344788888999*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MFPSSNTHEP YSHTSKTFLE GSFTYDYQNP ISSSRQENPF FLNFPSLFLD DHHHESPLSQ 60 ILPHKHQDQQ PSDHHAKEGN FTHISGETSK EEMSIEAKTS SKKRNLSATP RRRTGKKDRH 120 SKICTAQGVR DRRVRLSLHI ARKFFDLQDM LGFDKASKTI EWLFNRSNNA IKELSENIQP 180 KEYSDGNKIT ITSNNSSSSE GKNDSLMSEF EENSINGRKE KEKLSEMVQD NPHKRESMEK 240 ARARARERTK EKMMIKGLEK CKEWYETNPN NMFDQLGSSR RNSGFLDQDS NYNSYNTSVN 300 QEKGSPHEAN SQSLGHHFAI QNYFGGASTS GLDSGNCFMS FLGNWEINYA PIKSSSYSPF 360 AGNPNSIYLG NSRYHQFQPL DQDKNLSCRH HRLE

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MFPSSNTHEP YSHTSKTFLE GSFTYDYQNP ISSSRQENPF FLNFPSLFLD DHHHESPLSQ  60
ILPHKHQDQQ PSDHHAKEGN FTHISGETSK EEMSIEAKTS SKKRNLSATP RRRTGKKDRH  120
SKICTAQGVR DRRVRLSLHI ARKFFDLQDM LGFDKASKTI EWLFNRSNNA IKELSENIQP  180
KEYSDGNKIT ITSNNSSSSE GKNDSLMSEF EENSINGRKE KEKLSEMVQD NPHKRESMEK  240
ARARARERTK EKMMIKGLEK CKEWYETNPN NMFDQLGSSR RNSGFLDQDS NYNSYNTSVN  300
QEKGSPHEAN SQSLGHHFAI QNYFGGASTS GLDSGNCFMS FLGNWEINYA PIKSSSYSPF  360
AGNPNSIYLG NSRYHQFQPL DQDKNLSCRH HRLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	8e-31	TCP family protein