PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU17679.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 323aa MW: 36762.4 Da PI: 4.4337

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU17679.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	1.9e-18	61	113	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k PHU17679.1 61 KRRLKVDQVKALEKNFEVDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWK 113 347899**********************************************9 PP
2	HD-ZIP_I/II	128.1	3.7e-41	59	151	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 e+krrl+ +qvk+LE++Fe ++kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy++Lk+++d+lk++ e+L++e+e+L +e++e PHU17679.1 59 ERKRRLKVDQVKALEKNFEVDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYNVLKANFDSLKHNYESLQHENEALLKEISE 151 69*************************************************************************************999976 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MKRTRSTDSL GAPLMSMCQN TTDDQNHWNN HIYSRGFQSM LEGLDDETTC IEESGFGSER 60 KRRLKVDQVK ALEKNFEVDN KLEPERKVKL AQELGLQPRQ VAIWFQNRRA RWKTKQLERD 120 YNVLKANFDS LKHNYESLQH ENEALLKEIS ELKSKLHGGN IETKLAVKEE AFESEIDDKE 180 LEQSNNPNNN NSNPELNFEN CFFNDGNGIA LESLSDSDSS AILNDENSPN TTIISSSGAF 240 VITSNVGSGS SSRNSNNSSL NCFQFLDSNL EHDVDVPMKL VKLEEYNFFS VEESCSTLFT 300 DEQAPTLHWY CPGDMSIEEE FSV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	64	ERKRRL
2	60	89	RKRRLKVDQVKALEKNFEVDNKLEPERKVK
3	108	116	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	3e-54	HD-ZIP family protein