PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU16960.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 671aa MW: 75152.6 Da PI: 9.8257

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU16960.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22	3.8e-07	554	603	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av+qlG+g+W+ + + +Rt ++k++w ++ PHU16960.1 554 RRPFSVAEVEALVEAVEQLGTGRWRDVKIRAFeyaDHRTYVDVKDKWKTL 603 6789999*****************9988889999*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence
MSSKKRVRHG FNDYQFPVIP KAPRSVRRRR SHKNVDNDQI CAFELLAAVA GELLQESESS 60 ACSNAAVGKD VLSDCREVIK RDQLQEDKSM KSEFFDQGSC VESAYVLEPA VQEQNLKYSL 120 DKPSRTENNI FRKNIEDGSS SLEDVCGKRI ETGTKKQLDD GSKTEDLTVA NSCSVKGLIE 180 KHVNNNSAIN SDSSVQFPSY RAVPRPSFGK QGNNVKLGIR DDDENSFRSY RHSTNIMAFR 240 QTSHTGYRRM RKMLTSRHWK VLPQLKDWER SCSHYGIKSF HRNRKRVRAL ERCRLEIPSK 300 RRKLCHNSSI VAYDQQANSK SISKSREKGI KRDIISPRGA KVGASASDRN HQKKDPNVKF 360 SIKSFKVPEL LIEVPENETI GSLKRTVVEA VKTILGSGLR VGMVVQGKKV RDDNKTLQQA 420 GISQNGNLNL DTLGFTLEPS SYPVSPSLHS KDFSALSPRG VDHELTRRPP SPIMELELPS 480 ASSDPPKIML DEHDEDYHEL ALSPTNLIVD PPSGVDNPDS GALVIVCPPN GEAHPVVPMS 540 SKNGRSELPQ RRTRRPFSVA EVEALVEAVE QLGTGRWRDV KIRAFEYADH RTYVDVKDKW 600 KTLVHTASIA PQQRRGEPVP QELLDRVLIA HGYWSKQHGK HHAENAGALE NNSNNNNNST 660 SMSSKMAQSA I

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence

MSSKKRVRHG FNDYQFPVIP KAPRSVRRRR SHKNVDNDQI CAFELLAAVA GELLQESESS  60
ACSNAAVGKD VLSDCREVIK RDQLQEDKSM KSEFFDQGSC VESAYVLEPA VQEQNLKYSL  120
DKPSRTENNI FRKNIEDGSS SLEDVCGKRI ETGTKKQLDD GSKTEDLTVA NSCSVKGLIE  180
KHVNNNSAIN SDSSVQFPSY RAVPRPSFGK QGNNVKLGIR DDDENSFRSY RHSTNIMAFR  240
QTSHTGYRRM RKMLTSRHWK VLPQLKDWER SCSHYGIKSF HRNRKRVRAL ERCRLEIPSK  300
RRKLCHNSSI VAYDQQANSK SISKSREKGI KRDIISPRGA KVGASASDRN HQKKDPNVKF  360
SIKSFKVPEL LIEVPENETI GSLKRTVVEA VKTILGSGLR VGMVVQGKKV RDDNKTLQQA  420
GISQNGNLNL DTLGFTLEPS SYPVSPSLHS KDFSALSPRG VDHELTRRPP SPIMELELPS  480
ASSDPPKIML DEHDEDYHEL ALSPTNLIVD PPSGVDNPDS GALVIVCPPN GEAHPVVPMS  540
SKNGRSELPQ RRTRRPFSVA EVEALVEAVE QLGTGRWRDV KIRAFEYADH RTYVDVKDKW  600
KTLVHTASIA PQQRRGEPVP QELLDRVLIA HGYWSKQHGK HHAENAGALE NNSNNNNNST  660
SMSSKMAQSA I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	284	303	RKRVRALERCRLEIPSKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-101	MYB_related family protein