PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU16806.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 319aa    MW: 36247.8 Da    PI: 7.0636
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU16806.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.3e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd++l++ +   G  +W++ ++  g+ R++k+c++rw +yl
       PHU16806.1 14 KGPWSSEEDKKLINFILNNGQCCWRSLPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding51.22.9e-1671111547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++ E++  +d+++qlG++ W++Ia++++ gRt++++k++w+++
       PHU16806.1  71 SEYEEKMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                      6779**************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MGRQPCCDKN GVKKGPWSSE EDKKLINFIL NNGQCCWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDVKRGLL SEYEEKMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG  120
IDPITHKPIT SDQPTYDQPI IQQEKQTLIA PPSQTDLNRQ GNENTGTCPK NIKTTTTATT  180
TTVAMPSSET NLDRQENKNV GTCPRHIKTT TTTTTVVTPQ SETNLDRQKV PLIPPTEILI  240
PYESTTSSTS SFSSQSSNMI LEDLKFLPNF DNWQSDFNME INWTNDDFSS TLDYLLNDDD  300
ISDMNNTTIS QDWSQVLEV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.14e-88MYB family protein