PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU16252.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 464aa MW: 51941.2 Da PI: 8.3541

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU16252.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.1	9.5e-09	415	462	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +W++ E++ l +v+++G g+Wk I ++R ++k++w++ PHU16252.1 415 KWSALEEDTLRTGVQKYGIGNWKVILDAYRdifTTRQSGDLKDKWRNM 462 8*********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MGIDTHISQW ILEFILRQPL DDNILNDLIN VLPLPNDNLN LKKALLVRKI ESEIANGSVT 60 EKILELMELI EELDHQEGII RDSVATKAAY CAVAVECTVK FLKSERAGSD KGKYFEAVRR 120 IWKRRINLIE KVENVGVLSE ELWSWRDEIE AALWEDRCAE NVIRRSKGVF AVDVVNAFVR 180 EAKERIGAPF LEVVAETYHT DEAVKSVFGE VNKGGASKKN GKEVCKGNAL PRKKHVAFKR 240 TRGASGIRIS DSIESEVEAS GGQDDSSAEV KIAKKALKLS SLELRAMVKD PLPDALRFAE 300 TLCSVVRDNM GHQPAENNSD MAPQPMVSSS RMAQAGGENR EAQQNCHHAA ASKPDLANRS 360 SAAHTFEWDS FLDDINEGSP SGVNRVTLPS PKRTKVSPLK KYEFKKITTR RKPVKWSALE 420 EDTLRTGVQK YGIGNWKVIL DAYRDIFTTR QSGDLKDKWR NMIS

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MGIDTHISQW ILEFILRQPL DDNILNDLIN VLPLPNDNLN LKKALLVRKI ESEIANGSVT  60
EKILELMELI EELDHQEGII RDSVATKAAY CAVAVECTVK FLKSERAGSD KGKYFEAVRR  120
IWKRRINLIE KVENVGVLSE ELWSWRDEIE AALWEDRCAE NVIRRSKGVF AVDVVNAFVR  180
EAKERIGAPF LEVVAETYHT DEAVKSVFGE VNKGGASKKN GKEVCKGNAL PRKKHVAFKR  240
TRGASGIRIS DSIESEVEAS GGQDDSSAEV KIAKKALKLS SLELRAMVKD PLPDALRFAE  300
TLCSVVRDNM GHQPAENNSD MAPQPMVSSS RMAQAGGENR EAQQNCHHAA ASKPDLANRS  360
SAAHTFEWDS FLDDINEGSP SGVNRVTLPS PKRTKVSPLK KYEFKKITTR RKPVKWSALE  420
EDTLRTGVQK YGIGNWKVIL DAYRDIFTTR QSGDLKDKWR NMIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	1e-18	MYB_related family protein