PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU15350.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 356aa MW: 40377.8 Da PI: 8.2285

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU15350.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.4	1.2e-38	110	255	4	130
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssa...seceaesssss 81 kdrhski T++g+RdRR+Rls+e a++fF Lqd LGfdk+skt+eWLl+++ ai el+ t + sece s + PHU15350.1 110 SKDRHSKINTARGPRDRRMRLSLEAARKFFSLQDLLGFDKASKTVEWLLNKSDSAIEELAATnkqnscttttttgigaicA---SnslSECEVISGTDE 205 79**********************************************************7777777766666654432...033467744444443 PP TCP 82 asnsssg.kaaksaakskksqksaasalnlakesrakarararertrekm 130 +s++ ++ + k ++k+kk+++++a l +esr +arararert+ k+ PHU15350.1 206 TSSNDKNkETVKGEKKKKKKKTNPARIEPLTRESRDRARARARERTKIKK 255 3333334244455558899999999999****************9776 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MYSPSSNNCN YSPILSSINS FHIPSPSMQY ENELFFQSYH HDHIYFQQQQ QEEEVPLIED 60 LSLHILADST KTVLEGIIEE GGEGKGDDTM SSRNSIISGR ISKNNKRSSS KDRHSKINTA 120 RGPRDRRMRL SLEAARKFFS LQDLLGFDKA SKTVEWLLNK SDSAIEELAA TNKQNSCTTT 180 TTTGIGAICA SNSLSECEVI SGTDETSSND KNKETVKGEK KKKKKKTNPA RIEPLTRESR 240 DRARARARER TKIKKISQID KSKAPANDLN PSGSNWKPIS KTREEHVTHE QLMTFHQEKQ 300 QLIGTNKENN IVDENNLVFN GNWNPFSIFN YHDQNAGISN EHQFTDFQFC GKLWEG

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MYSPSSNNCN YSPILSSINS FHIPSPSMQY ENELFFQSYH HDHIYFQQQQ QEEEVPLIED  60
LSLHILADST KTVLEGIIEE GGEGKGDDTM SSRNSIISGR ISKNNKRSSS KDRHSKINTA  120
RGPRDRRMRL SLEAARKFFS LQDLLGFDKA SKTVEWLLNK SDSAIEELAA TNKQNSCTTT  180
TTTGIGAICA SNSLSECEVI SGTDETSSND KNKETVKGEK KKKKKKTNPA RIEPLTRESR  240
DRARARARER TKIKKISQID KSKAPANDLN PSGSNWKPIS KTREEHVTHE QLMTFHQEKQ  300
QLIGTNKENN IVDENNLVFN GNWNPFSIFN YHDQNAGISN EHQFTDFQFC GKLWEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	220	226	KKKKKKK
2	240	250	RDRARARARER
3	240	252	RDRARARARERTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	3e-20	TCP family protein