PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU14348.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 280aa    MW: 32263.2 Da    PI: 7.2369
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU14348.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.68.2e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed +l+ +++  G  +W++ ++  g+ R++k+c++rw +yl
       PHU14348.1 14 KGPWSPQEDNILISYIQNNGHSNWRALPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding48.71.8e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ ++++++ lG++ W++Ia+++  gRt++++k+ w+++l
       PHU14348.1  67 RGNFSKEEEDTIIQLHENLGNR-WSAIAARLS-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MGRAPCCEKM GLKKGPWSPQ EDNILISYIQ NNGHSNWRAL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF SKEEEDTIIQ LHENLGNRWS AIAARLSGRT DNEIKNVWHT HLKKKLKNYQ  120
PPQNSKRHFK TNHDSKKGPT TESSNNSDFS TSANNTNTHK KHMKIAPNSP VLSSSEMSTV  180
TLVVDDRQRV IIKEEKIESP LEYFPKIDES FWTEELSAEK NNDNDYVMAA GLDQDIQAQI  240
QLSSVKEENL DNTSTKMEED MDFWYNVFIK TGDFLELPEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-88MYB family protein