PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU13296.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 943aa    MW: 106632 Da    PI: 6.0077
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU13296.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS292.11.5e-895749421374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPilkfshl 96 
                 lv+lLl++Ae v++++++la++ +ar    as +g+p+qRl +yf eAL++r+ +   ++ ++ + +++ +        ++  + + +   P+ ++ ++
  PHU13296.1 574 LVHLLLAAAEEVDQQQFHLASQSIARCLWKASATGNPIQRLCFYFGEALQERIDH---KIGRSPSFERKLRFLstlALGTTPEVLTCHTEIPFSQVMQF 669
                 68***************************************************99...333222222222111111222222333466678******** PP

        GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                 +  qaI+e v+g++++H +Df+i  G+Q   L+qaLa +R+++   l+iT++g+   ++kee+eetg+rL++fA++l++pf+f ++ +++++dl+ e+ 
  PHU13296.1 670 AGIQAIVENVKGATKIHLVDFNIRSGIQCTGLMQALAdQRDRPIELLKITAIGH---QEKEEIEETGKRLQSFANSLNLPFSFAMVFMSDMKDLTAESV 765
                 *************************************77778889*********...57**************************************** PP

        GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                 +vk++E +aV +   l ++     + +++ d++++++++l+P vvvv+e ea+hns+sFl+rf+ea+ +ys+lfd++e  + r++  r+ +E + +g+ 
  PHU13296.1 766 NVKEDEIVAVYCYTVLRTMI----CRQDNLDNTMRVIRGLRPAVVVVCEIEANHNSPSFLNRFVEAIFFYSVLFDCFEDCMDRDNLVRQRIEVFHIGEG 860
                 ******************99....55555777******************************************************************* PP

        GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 i+n+va+egaer+ r+ +l  Wr+ + ++G+ ++++se+   qakl+l++++ +    v++  ++l+ gWk+ p+ svS W+
  PHU13296.1 861 IRNMVAAEGAERFTRNVKLDVWRAYFARFGMVEMEVSESSRYQAKLILEQFShGSSCIVQNGGKALLVGWKGTPIKSVSIWK 942
                 ****************************************************666677777788888**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 943 aa     Download sequence    
MDSSSELYQQ EEKVISVCEY AANMLRESFQ CLTIILLSLL LPLTFIVLAR LSVARYLIAT  60
SAYTVPDTLL VRLYIYVNPT LLHLLVPFVS ISALSQCLTG RTLSDHMMAR PRVCASWFLL  120
FAFQICACVG IEGSIAVGVD GSGFGRERLW LVTRSLFFLG LHETTLFWSK KVVKPVVDDT  180
VFGAEAEDRY VEKVAMALSF GLLWWCKLRD EVESLVVVAE MKRDLIGSVG WWLYYVTVAI  240
GMVKVVKALV WLNFVLFCGN VVDSDLSCAD SSLLMPHSCL ILQKYTTLSE SDTHSLTFLK  300
SPNNMESDNA GCCTRNDDKV SIIYDLTYIR PRGHDSSREN SLLQKCMDTK SPQLQSFKLS  360
PRPAVKHRSP KAEHFTSPGV QIMDSHEHLQ ECGRNELINN SFVDPWYELD SEDLDSLYAV  420
FDDKHHKNTS DKQVELLEDQ RQNISDHWTQ IDDSSNMVLQ VTPEASNGIQ PQVPRLGGFH  480
DEKTNSISLA SLELLNNCGR LFKKSSEENL SNVCRNEARV SNIPKLSTEE ILRIAGERYI  540
QYSTHRVDGL SMFIHPYASS LTGLSIEQTK DMELVHLLLA AAEEVDQQQF HLASQSIARC  600
LWKASATGNP IQRLCFYFGE ALQERIDHKI GRSPSFERKL RFLSTLALGT TPEVLTCHTE  660
IPFSQVMQFA GIQAIVENVK GATKIHLVDF NIRSGIQCTG LMQALADQRD RPIELLKITA  720
IGHQEKEEIE ETGKRLQSFA NSLNLPFSFA MVFMSDMKDL TAESVNVKED EIVAVYCYTV  780
LRTMICRQDN LDNTMRVIRG LRPAVVVVCE IEANHNSPSF LNRFVEAIFF YSVLFDCFED  840
CMDRDNLVRQ RIEVFHIGEG IRNMVAAEGA ERFTRNVKLD VWRAYFARFG MVEMEVSESS  900
RYQAKLILEQ FSHGSSCIVQ NGGKALLVGW KGTPIKSVSI WKF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-44GRAS family protein