PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU12256.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 248aa MW: 28150.4 Da PI: 9.1647

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU12256.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.8	3e-19	22	66	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eEde+++++++qlG++ W++Ia++++ gR+++++k++w++ PHU12256.1 22 RGNYTKEEDEIILNLHAQLGNK-WSAIAAHLP-GRSDNEIKNHWHTT 66 899*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
LARCGKSCRL RWMNHLSPNV KRGNYTKEED EIILNLHAQL GNKWSAIAAH LPGRSDNEIK 60 NHWHTTLKKH ATNNATNSSS DKSSKKCSNN KNKNTKSNAS KDASPNNNMH ENVILESSEW 120 SPKESLSDQE LISSDSTSVD YQNDVFQEEN LVEITSGSFW TEPFVVESFN SPRIDFLGPP 180 SIDYGLVCPP SPFIGEGFVS SFDLDDYNCG RIVEEAEDGK KQHTKKKEKT KKMNRKKKKK 240 KQTKKMWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	225	237	KKKEKTKKMNRKK
2	225	241	KKKEKTKKMNRKKKKKK
3	234	241	NRKKKKKK
4	235	241	RKKKKKK
5	236	245	KKKKKKQTKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	2e-32	MYB family protein