PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU11683.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 280aa    MW: 31310.4 Da    PI: 8.7382
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU11683.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l  +v+++G g Wk I r          R+  ++k++w+++
       PHU11683.1  5 KQKWTSEEEEALRAGVAKHGAGKWKNIQRDPEfnhllYSRSNIDLKDKWRNL 56
                     79***********************************9************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MGNPKQKWTS EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LYSRSNIDLK DKWRNLNVSA  60
NGQGPRDKSR TPKVKTNLDA AAAPLPIMQA PVSSTLVPQD ASADTVMEDS SKCALDGKNA  120
SKYNQMIYDA LSSLKEPNGS DTSTLVNFIE QRQEVPQNFR RLLSSRLRRL VQQDKLEKIE  180
NCYKIKKEVL EKTKIATPKQ KHVGPRQFPN SVYLGDTAEE AAITAAYKIA EAENKSFVAA  240
EAAKEAERVS KMEEESDNSL QVYKDIFDKC SHGDIVLLMA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-62MYB_related family protein