PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU09910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 179aa MW: 20050.7 Da PI: 10.3671 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.9 | 3e-14 | 28 | 74 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 +i ++ r tfskRr+g++KKA+E +++ +va i+fss+g+ y+ PHU09910.1 28 KITKQTSRMATFSKRRKGLFKKAKEFESMTGSRVASIVFSSSGRPYT 74 688999*************************************9776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence |
MQNLLVEEEE KKKLRRMGTG KKKIEIQKIT KQTSRMATFS KRRKGLFKKA KEFESMTGSR 60 VASIVFSSSG RPYTCGDVNS VIQKHFSGIS SSRCTEPSTS GLNSHHSNSE DVVVAFGDSS 120 GSRWSSTPRR NGLRHWVESI DVEGCQNLNQ LLMLKQQLEG TREKIASIED SESFQALFA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 12 | 51 | KKLRRMGTGKKKIEIQKITKQTSRMATFSKRRKGLFKKAK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 3e-11 | M-type_MADS family protein |