PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU08874.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 963aa MW: 106893 Da PI: 6.4258

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU08874.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.1	3.7e-28	567	618	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l+++Fs+++kdAAk++gvc+T+LKriCRqyGI+RWP+Rki+++ PHU08874.1 567 AEKHVSLSVLQQHFSGSLKDAAKCIGVCPTTLKRICRQYGISRWPSRKISKV 618 5899*********************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 963 aa Download sequence
MENGIGFRAS PRSHQMEGIA SIDGGTCCSY VDDTFNSAME IMNLDTCASW CSSSPHGIQQ 60 MFASYPAFSP INPMSINYEP FEELNYYEQN TETFPCGREN FMFPQNHLVD KKQNYVTDSV 120 QNCIIPKSPC QSLAERMLKA LELFKKASGG GILAQVWIPM KSGDQYILST YEQPFLLDQV 180 LSGYREVSRK FTFDLEMKPG SCPGLPGRVF TSRIPEWTSN ILYYKEAEYL RIQYAVDHEV 240 RGCIALPVLE EDGHDTPCCA VLELVTMKEM PNFDLEMSHV CQALQAVNLR STTPPRFSSK 300 SISKNQRAAL TEIKDVLRAV CHAHRLPLAL TWIPHSCREG GNDIIRAHAR GSIARSDEKR 360 VLHVENIACY VKDKEMQGFL HACMGHDLEE GQGIVGKSLQ SNHPFFYLDV KEYHISEYPL 420 VHHARKFGLN AAVAIRLRST LTGDDDYVVE FFLPVDIEGS TEQQLLLDNL SRTMQRICRS 480 LRTLSDAELV GQEGEKCGLQ SESVLSLPPI DFSRRISQQS LLDNTLDLSK APIDVCDLER 540 AGIEANRSHK QTLSVSKRQT GKKRSAAEKH VSLSVLQQHF SGSLKDAAKC IGVCPTTLKR 600 ICRQYGISRW PSRKISKVNR SLVKIQTVLK SVQGIGGGLK FDTVTGGLVA ASSILQDFDS 660 RKSVVFPCKD VLIQNPESHL QDAVSMLQTS CIDNHNSLVK IEENLHVDGS QLAESNHLSP 720 SSFRVDDKPN SSVSGVCHGS KLAALVEGSS LPSKPEWTSP RNVSLVSFHT KEGWSSGLNK 780 GSLNLDTSGC HFISRCPDSM ANTKTEGSTE KDGDDGIMEH NKVCTLGMTD SSNTSDSTIN 840 GSSFSSRSSS ERKHTTVEHG GSQITVKATY KEDKIRFKFE PSSGCFQLYE EVAKRFKLQT 900 GTFQLQYLDD EEEWVMLVND ADLNECSEIL DILGTRNVKL LVHDVSCTVG SSGSSNCFLT 960 NDF

Sequence ? help Back to Top

Protein Sequence Length: 963 aa Download sequence

MENGIGFRAS PRSHQMEGIA SIDGGTCCSY VDDTFNSAME IMNLDTCASW CSSSPHGIQQ  60
MFASYPAFSP INPMSINYEP FEELNYYEQN TETFPCGREN FMFPQNHLVD KKQNYVTDSV  120
QNCIIPKSPC QSLAERMLKA LELFKKASGG GILAQVWIPM KSGDQYILST YEQPFLLDQV  180
LSGYREVSRK FTFDLEMKPG SCPGLPGRVF TSRIPEWTSN ILYYKEAEYL RIQYAVDHEV  240
RGCIALPVLE EDGHDTPCCA VLELVTMKEM PNFDLEMSHV CQALQAVNLR STTPPRFSSK  300
SISKNQRAAL TEIKDVLRAV CHAHRLPLAL TWIPHSCREG GNDIIRAHAR GSIARSDEKR  360
VLHVENIACY VKDKEMQGFL HACMGHDLEE GQGIVGKSLQ SNHPFFYLDV KEYHISEYPL  420
VHHARKFGLN AAVAIRLRST LTGDDDYVVE FFLPVDIEGS TEQQLLLDNL SRTMQRICRS  480
LRTLSDAELV GQEGEKCGLQ SESVLSLPPI DFSRRISQQS LLDNTLDLSK APIDVCDLER  540
AGIEANRSHK QTLSVSKRQT GKKRSAAEKH VSLSVLQQHF SGSLKDAAKC IGVCPTTLKR  600
ICRQYGISRW PSRKISKVNR SLVKIQTVLK SVQGIGGGLK FDTVTGGLVA ASSILQDFDS  660
RKSVVFPCKD VLIQNPESHL QDAVSMLQTS CIDNHNSLVK IEENLHVDGS QLAESNHLSP  720
SSFRVDDKPN SSVSGVCHGS KLAALVEGSS LPSKPEWTSP RNVSLVSFHT KEGWSSGLNK  780
GSLNLDTSGC HFISRCPDSM ANTKTEGSTE KDGDDGIMEH NKVCTLGMTD SSNTSDSTIN  840
GSSFSSRSSS ERKHTTVEHG GSQITVKATY KEDKIRFKFE PSSGCFQLYE EVAKRFKLQT  900
GTFQLQYLDD EEEWVMLVND ADLNECSEIL DILGTRNVKL LVHDVSCTVG SSGSSNCFLT  960
NDF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.1	0.0	Nin-like family protein