PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU08250.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 1014aa MW: 115664 Da PI: 5.6809

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU08250.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.6	1.1e-08	900	926	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f+ ++ +C++G+rCkF H++ PHU08250.1 900 PGQPLCIFYCKYRICRFGSRCKFDHPM 926 589**********************95 PP
2	zf-CCCH	22.1	2.6e-07	979	1005	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC+f++r tC++G++CkF H++ PHU08250.1 979 PGQPLCMFYSRCWTCNFGSSCKFDHPF 1005 5899*****88**********95 PP

Sequence ? help Back to Top
Protein Sequence Length: 1014 aa Download sequence
MAYAAITCLM RTIHQSMELT ACDLQLFYEK LERLRAILEK PWKATADVEA LTSLEAEITE 60 LAYSAEDMSD LESSKVFLAQ NVEERSRSMW ELFFLLEQAL ECIDSTMKQW VATSYSMKDL 120 KVQPYSLAGL SEHAVERPQN MMVGYETEFE MMLDQLTRGE RELEVVSIVG MGGIGKTTLA 180 TKLYSHPHIM SHFDILAKAT VSQEHCVRNI LLALLSTTSA EPDDELRDRL QKLLKRKRYL 240 VVIDDIWTTE AWDDIKLCFP DCNNGSRIIL TTRNVEVTEY ANSGKPPYHM RLMNFDESWS 300 LLYEKVFAKD SFPHEFGQLG KQIAFKCGGL PLSIVVIGGL LSKIGKSLGD WQIVASNVSS 360 TVSTDVDVQC MKVLALSYHY LPSHLKPCFL YFAIFSEDQL IFVDKVVQLW VAEGFLKVEE 420 MKCIEEVAET CLNQLIDRSL ISTCEYSRFG KIESCEMHDV TREFCLREAQ NMNFVNDLRG 480 KSEQNPCKQS MPCSSKSRGR ISIHNVEEYV RCHNSEAYSF ICFGRFQCRV TEFPFKLVRV 540 LHLAFRSCIT FPSEMLHLIH LRHLSLSLSS FEQCLEISPI IIDIPTSISC LFYLQTFILN 600 LSGVGLQYPI MLPLEILTMP QLRHLHLDWN YLRSHEPTEK SLVLKNLQCF SGLNPRFCTG 660 SFFRLFPNLK KLGVRGVPED FSNCKDMYDF SMLDQIEELE FLVNAQNYSC FLESTTPSGS 720 PPQHLLRSYP ADDVPLLLLP PSDAFPQNLK SLALSGQFFL PWKDLSIVGK LPKLESLKLS 780 YNACEGVEWE VADEGFPRLK FLQLNYLGIR YWRANSDHFP CLERLFLYSC WNLDSIPHDF 840 VDITTLALID ISYCQESVGN SARQIQQDIQ DNYGCSFEVH TRPVPPADCL LSPIGLPLRP 900 GQPLCIFYCK YRICRFGSRC KFDHPMTVQP PLGSLLETSA FNSARSIQLD IQGCSVEVPT 960 RPVLPADCLL SPIGLPLRPG QPLCMFYSRC WTCNFGSSCK FDHPFFVGEH TWGS

Sequence ? help Back to Top

Protein Sequence Length: 1014 aa Download sequence

MAYAAITCLM RTIHQSMELT ACDLQLFYEK LERLRAILEK PWKATADVEA LTSLEAEITE  60
LAYSAEDMSD LESSKVFLAQ NVEERSRSMW ELFFLLEQAL ECIDSTMKQW VATSYSMKDL  120
KVQPYSLAGL SEHAVERPQN MMVGYETEFE MMLDQLTRGE RELEVVSIVG MGGIGKTTLA  180
TKLYSHPHIM SHFDILAKAT VSQEHCVRNI LLALLSTTSA EPDDELRDRL QKLLKRKRYL  240
VVIDDIWTTE AWDDIKLCFP DCNNGSRIIL TTRNVEVTEY ANSGKPPYHM RLMNFDESWS  300
LLYEKVFAKD SFPHEFGQLG KQIAFKCGGL PLSIVVIGGL LSKIGKSLGD WQIVASNVSS  360
TVSTDVDVQC MKVLALSYHY LPSHLKPCFL YFAIFSEDQL IFVDKVVQLW VAEGFLKVEE  420
MKCIEEVAET CLNQLIDRSL ISTCEYSRFG KIESCEMHDV TREFCLREAQ NMNFVNDLRG  480
KSEQNPCKQS MPCSSKSRGR ISIHNVEEYV RCHNSEAYSF ICFGRFQCRV TEFPFKLVRV  540
LHLAFRSCIT FPSEMLHLIH LRHLSLSLSS FEQCLEISPI IIDIPTSISC LFYLQTFILN  600
LSGVGLQYPI MLPLEILTMP QLRHLHLDWN YLRSHEPTEK SLVLKNLQCF SGLNPRFCTG  660
SFFRLFPNLK KLGVRGVPED FSNCKDMYDF SMLDQIEELE FLVNAQNYSC FLESTTPSGS  720
PPQHLLRSYP ADDVPLLLLP PSDAFPQNLK SLALSGQFFL PWKDLSIVGK LPKLESLKLS  780
YNACEGVEWE VADEGFPRLK FLQLNYLGIR YWRANSDHFP CLERLFLYSC WNLDSIPHDF  840
VDITTLALID ISYCQESVGN SARQIQQDIQ DNYGCSFEVH TRPVPPADCL LSPIGLPLRP  900
GQPLCIFYCK YRICRFGSRC KFDHPMTVQP PLGSLLETSA FNSARSIQLD IQGCSVEVPT  960
RPVLPADCLL SPIGLPLRPG QPLCMFYSRC WTCNFGSSCK FDHPFFVGEH TWGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	4e-22	C3H family protein