PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU07808.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 208aa    MW: 23783.8 Da    PI: 5.4648
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU07808.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.52.2e-101852438
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevavi 38
                e +  r+vtfsk r  ++KKA+EL   Cd+++ v 
  PHU07808.1 18 EKQDERYVTFSKHRSDLFKKASELVMECDVDIGVT 52
                56778**************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MENKKGKGRQ KMPLRKKEKQ DERYVTFSKH RSDLFKKASE LVMECDVDIG VTFLFLTGNP  60
FAFFHPTVEA SVSLFQNLDL KLSESTQIVA AQARNRVKEL QSELDELDLR EDIAIANKNM  120
YDKVMETRQK GLWESIEQLN AEELTKFEAW LNVTRFNLQN RLNQLGNGAS SSLGCDEGTG  180
RSESPERGEI ESTNSDALVI HKNEYKNC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1517KGKGRQKMPLRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-17M-type_MADS family protein