PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU07804.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 250aa MW: 28514.8 Da PI: 9.9392 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47.4 | 2.4e-15 | 15 | 59 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+ie + r+vtfskRr g+ KKA+EL Cd+++ +i fs+tg+ PHU07804.1 15 KKIEKQDDRYVTFSKRRSGLYKKASELVKECDVDIGMIFFSPTGN 59 689****************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence |
MENKKGKGRQ KIPMKKIEKQ DDRYVTFSKR RSGLYKKASE LVKECDVDIG MIFFSPTGNP 60 FAFFHPTVDA VVSRFQNPDL KLSESTQLVA AQARNRVNGL QSGLDELDLR EDIAIANKNV 120 YDKVLETTQK KRIDEGEQRT IARAHTSSSN GEDRKVIISP KLSWADEIEA MEVDVPKVRK 180 FLSILLKRWD SKVNAITEAK DLNKMVMDEL IGNPKTYEML KKLRKLKDEP KAEKYLVLNA 240 AKDIPSAEDK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 9e-26 | M-type_MADS family protein |