PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHU06453.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 177aa MW: 20308 Da PI: 7.6567 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.8 | 2.4e-12 | 15 | 64 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHH.HHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSv.LCdaevaviifsstgklyey 49 ++ien++ r vtfskR+ g+ KKA+ L d++v +i +s++gk y + PHU06453.1 15 EKIENETTRLVTFSKRKSGLYKKASKLVEkYDDVDVGIISYSPNGKPYSF 64 57************************9852679************98887 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 177 aa Download sequence |
MSGRKYLGRK KIPIEKIENE TTRLVTFSKR KSGLYKKASK LVEKYDDVDV GIISYSPNGK 60 PYSFFHPTFD SVISRFVSPD TQPSVDGRFF DANARIKVKE RRGELDKLDM VEKIISNQTP 120 DANDMENVWE YIDNVKEEDV TRLEEWLDLV DLKLNHKLRM LENGASSSTQ APPNGGF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-20 | M-type_MADS family protein |