PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU06298.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 182aa MW: 20791.6 Da PI: 8.7175

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU06298.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	31.5	2.3e-10	15	63	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ien++ r v fskR+ + KKA+ L d++v +i +s++gk y + PHU06298.1 15 EKIENETTRLVRFSKRKSVLYKKASMLVEKYDVDVGIISYSPNGKPYSF 63 57*******************************************9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence
MSKRKYLGHR KIPVEKIENE TTRLVRFSKR KSVLYKKASM LVEKYDVDVG IISYSPNGKP 60 YSFFHPTLDS VIRSFVSPDT QPSVDSGIVA ANARIKVTER RGQLDNLDIV EKIISNQTPD 120 ANDMENLWEY IDNVNKEDVK RLEEWLDLVD LKLNHKLMVL ENGVASSTQA PPNNAYQAYS 180 GF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-17	M-type_MADS family protein