PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU06297.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 170aa MW: 19211.5 Da PI: 4.5602 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.9 | 2.2e-12 | 2 | 51 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHH.HHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSv.LCdaevaviifsstgklyey 49 ++ien++ r vtfskR+ g+ KKA+ L d++v +i +s++gk y + PHU06297.1 2 EKIENETTRLVTFSKRKSGLYKKASKLVEkYDDVDVGIISYSPNGKPYSF 51 57************************9852679************98887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence |
MEKIENETTR LVTFSKRKSG LYKKASKLVE KYDDVDVGII SYSPNGKPYS FFHPTFDSVV 60 GHFVSPDTQP SVDSGIVAAS AQIKVMERRA QLDNLDIVEK IISNQTPGAN DMENLWEYID 120 NVNEEDVKRL EEWLDLVELK INHKLMMLEN GATSSTQAPS NNAYQAYGDF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-16 | M-type_MADS family protein |