PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU06075.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C3H | ||||||||
Protein Properties | Length: 723aa MW: 78547.6 Da PI: 6.3284 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.5 | 4.1e-07 | 300 | 320 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg PHU06075.1 300 PCPEFRK-GACRRGDMCEYAHG 320 8******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 723 aa Download sequence |
MNVNHLTVET EDTLASLLEF AANNDIDAFK RWIEHDLSSV HEVGLWYGRQ KGSKQMVLEH 60 RTPLMVAAMY GSIDVLKLIL SLSGVDVNHS CGRDDSTALH CAVSGGSLNA VDAVRLLVEA 120 GADPNFKDAN GHRPLDVIVT NPKVHTVKPC LENLLKTDAM GDCNPRVSMA SSNSNSPPLS 180 PSLGNRSPSS PSDTTSSPGS EKCTDLPVPS PSDTTSSPGS EKCADLPVPS PSEKKEYPID 240 PSLPDIKNSI YSTDEFRMFS FKIKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP 300 CPEFRKGACR RGDMCEYAHG VFECWLHPAQ YRTRLCKDST QCDRRVCFFA HTQEELRPLY 360 VSTGSAVLSP RSNTSAANAI DFAAAMGLIP GSPSSVSVMS PSAFTPPMSP SANGVSNMGW 420 PPQNVPALHL PGSNLQSSRL RSSLNARDIP AKDLTTLSDF DVEQQQLLNG LPCLSQSSMS 480 PNSFNRSVRP KTLTPSNLDD LFSAEGSSPR YSDQALAQAV FSPTHKSAVF NQFHQQQQAM 540 LSPINTKFSP RNVDNPLLQG SFGVPSSRSM SPRGMEPISP MSSRVSILSQ GDKQHQFRSL 600 SSRDLGSSAA SAIAGSPSDT WPNWGIASGE PDWAVRNEEF GRLRRSSSFE LANNGEEPDL 660 SWVQSLVKES PQEATEKSAS RVSGITGSGA DISEGSTSGS QSEQYDQLGA WMEQMKLDQL 720 IAR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | C3H family protein |