PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU03995.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 331aa MW: 37740.4 Da PI: 7.1698

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU03995.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.7	2.3e-09	87	111	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C f++ GtC+ G+ C+FaHg PHU03995.1 87 YKTRMCAKFLE-GTCRNGEHCTFAHG 111 9********.***********9 PP
2	zf-CCCH	24.6	4.4e-08	146	168	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +++C+ f+ + +C+yG++C+F H PHU03995.1 146 MKICKKFYNGEECPYGEKCNFLH 168 579****66********** PP
3	zf-CCCH	38.4	2.1e-12	221	247	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt++C+ + tG+C++ drC+FaHg+ PHU03995.1 221 WKTKICSKWETTGQCPFRDRCHFAHGQ 247 8************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MSFSDQPHVP SNFMPMPFSG GDGGDVWPHS PMNHELYESY SQFEHVPFKR MRDSDNNLPN 60 SSTYPAMNSR VNLPNLPGGK GTSHIFYKTR MCAKFLEGTC RNGEHCTFAH GVEDLREPPP 120 NWQDLVREKD RGAENWNDDQ KIIHRMKICK KFYNGEECPY GEKCNFLHER PPKFKNDMLR 180 QRESSAISIG TTGNRSDPEL IEISKHGNAD SDAVRIKPVY WKTKICSKWE TTGQCPFRDR 240 CHFAHGQSEL QMPTGRVDTD MLTNSGPITP RSFSVPLVDS SPHTVVNASI QEEKEEKKNL 300 KWKLSKKICG IYGDWLDDLV PPHLLPSNAD S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	9e-74	C3H family protein