PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU03791.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 392aa MW: 44623.2 Da PI: 8.0122

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU03791.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	23.1	1.8e-07	239	261	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F+r nL+ H+r H PHU03791.1 239 HYCQICGKGFKRDANLRMHMRAH 261 68*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MNIQGTTSSN PCFPNSTTNN PQNLPLYESI HHHNIQEDIF SSSLVHNSHQ QNSFLFNLSL 60 LKDKVHQVQS LATMFVSHDD QTLTHHPHES TSVAIANMGT LIQEIITIAS SLMFSCQKIA 120 LDPSSASQNS SIFREPSQMV KIQDDGHGRG DGQMDHLLQD YNWYEENYNY CNTHEDNKNH 180 VTSSIIASNA ISSHDYDSKE FGKREVLLST SKGKVHVNNE DNYDIIELDA SDLLAKYTHY 240 CQICGKGFKR DANLRMHMRA HGDEYKSSAA LSNPLKKNNH DYVSQLIDNK IKYSCPQEGC 300 KWNKKHAKFQ PLKSMVCVKN HYKRSHCPKM YVCKRCNKKQ FSVLSDLRTH EKHCGDLKWQ 360 CSCGTTFSRK DKLMGHVSLF VGHTPLIKES VS

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MNIQGTTSSN PCFPNSTTNN PQNLPLYESI HHHNIQEDIF SSSLVHNSHQ QNSFLFNLSL  60
LKDKVHQVQS LATMFVSHDD QTLTHHPHES TSVAIANMGT LIQEIITIAS SLMFSCQKIA  120
LDPSSASQNS SIFREPSQMV KIQDDGHGRG DGQMDHLLQD YNWYEENYNY CNTHEDNKNH  180
VTSSIIASNA ISSHDYDSKE FGKREVLLST SKGKVHVNNE DNYDIIELDA SDLLAKYTHY  240
CQICGKGFKR DANLRMHMRA HGDEYKSSAA LSNPLKKNNH DYVSQLIDNK IKYSCPQEGC  300
KWNKKHAKFQ PLKSMVCVKN HYKRSHCPKM YVCKRCNKKQ FSVLSDLRTH EKHCGDLKWQ  360
CSCGTTFSRK DKLMGHVSLF VGHTPLIKES VS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	2e-89	C2H2 family protein