PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU03421.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 490aa MW: 54210.6 Da PI: 6.8794

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU03421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.2e-17	153	202	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g PHU03421.1 153 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 202 78*****************......55**********************997 PP
2	AP2	41.2	4.2e-13	245	295	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g PHU03421.1 245 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 295 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MMLDLNLSAI YDEKIPEGSV ADESEVGSSN SSARNAEACS SAGDDETCST RAAGSGDIFA 60 FNFNILKVGH GGDERNRSCC NNDDDHHHRS EYVTQQLFPV NTAELNTRAH TSQNADWIDR 120 STYDPANTVG FREMPKQQQP VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL 180 GGFDTAHAAA RAYDRAAIKF RGVDADINFN LSDYEEGMKQ MSNLSKEEFV HVLRRQSTGF 240 SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDSEV EAARAYDKAA IKCNGRDAVT 300 NFEPSAYEGE PNSNPQIEGS QQDLDLNLGI ATSSPKEIER SSVFQYHPYD MQESTKSQMD 360 KSGSQTVGSS HFKGLPAVTS EQAHLWNGVY SNFFPSYEER ASGKRIDVGT SQGHPNWAMQ 420 MHGQVGTTSM SMFSAAASSG FSTPATTASA SVMSGPNSLN NLNLSFASYS TPSTNTTQYY 480 YQIRPPLPPP

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MMLDLNLSAI YDEKIPEGSV ADESEVGSSN SSARNAEACS SAGDDETCST RAAGSGDIFA  60
FNFNILKVGH GGDERNRSCC NNDDDHHHRS EYVTQQLFPV NTAELNTRAH TSQNADWIDR  120
STYDPANTVG FREMPKQQQP VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL  180
GGFDTAHAAA RAYDRAAIKF RGVDADINFN LSDYEEGMKQ MSNLSKEEFV HVLRRQSTGF  240
SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDSEV EAARAYDKAA IKCNGRDAVT  300
NFEPSAYEGE PNSNPQIEGS QQDLDLNLGI ATSSPKEIER SSVFQYHPYD MQESTKSQMD  360
KSGSQTVGSS HFKGLPAVTS EQAHLWNGVY SNFFPSYEER ASGKRIDVGT SQGHPNWAMQ  420
MHGQVGTTSM SMFSAAASSG FSTPATTASA SVMSGPNSLN NLNLSFASYS TPSTNTTQYY  480
YQIRPPLPPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-115	AP2 family protein