PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU02333.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 418aa MW: 44601 Da PI: 7.6889

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU02333.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.5	6.5e-40	95	221	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + PHU02333.1 95 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqlrssyfnsn 193 789******************************************************************999877777777775555555555666666 PP TCP 89 ...........................k 89 + PHU02333.1 194 fslsqrrglfpgiglstdtsattllnfQ 221 6677777777777766555444444441 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MDGGGDDHLH QHHQQHHHHH HRPIATFPFQ LLEKKEDEAC SSSSNAGAAY TTALAISNID 60 SAHTNPNSTP RSTTSSASSL QITASGGTDI SKKPPPKRTS TKDRHTKVDG RGRRIRMPAL 120 CAARVFQLTR ELGHKSDGET IEWLLQQAEP AVIAATGTGT IPANFTSLNI SLRSSGSSMS 180 VPSQLRSSYF NSNFSLSQRR GLFPGIGLST DTSATTLLNF QSANLSPNMQ LQTKPELRDN 240 SIDLTETSAA DDNLSRKRRS DLDLEQHHQQ QQQHQMGSYL LQSSTGTMPT SHSSIPANFW 300 MVTNPIPSNQ VMGGDPIWPF SSVNNSGAAA ALYRGTMPSG LQFMNFPTPV ALLPSQQLGG 360 SSGGGGSGNG NNGLGEGQLG MFAGLNPYRA GGGGVSESQA SGSHSHHDDR HDTTSHHS

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MDGGGDDHLH QHHQQHHHHH HRPIATFPFQ LLEKKEDEAC SSSSNAGAAY TTALAISNID  60
SAHTNPNSTP RSTTSSASSL QITASGGTDI SKKPPPKRTS TKDRHTKVDG RGRRIRMPAL  120
CAARVFQLTR ELGHKSDGET IEWLLQQAEP AVIAATGTGT IPANFTSLNI SLRSSGSSMS  180
VPSQLRSSYF NSNFSLSQRR GLFPGIGLST DTSATTLLNF QSANLSPNMQ LQTKPELRDN  240
SIDLTETSAA DDNLSRKRRS DLDLEQHHQQ QQQHQMGSYL LQSSTGTMPT SHSSIPANFW  300
MVTNPIPSNQ VMGGDPIWPF SSVNNSGAAA ALYRGTMPSG LQFMNFPTPV ALLPSQQLGG  360
SSGGGGSGNG NNGLGEGQLG MFAGLNPYRA GGGGVSESQA SGSHSHHDDR HDTTSHHS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	255	260	SRKRRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	3e-52	TCP family protein