PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU00882.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 380aa    MW: 40747.6 Da    PI: 7.4539
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU00882.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.5e-13123167347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ I+r + + Rt+ q+ s+ qky
       PHU00882.1 123 PWTEEEHRLFLIGLQKLGKGDWRGISRNFVTSRTPTQVASHAQKY 167
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    
MTRRCSHCNN NGHNSRTCPT RGGGGGATSS IGGGSAIGGG GVRLFGVRLT DGSIMKKSAS  60
MGNLSSLHYH SSSSAAASPN HPGSPSSDVL REAVHLTDGY LSDDPVHASC SANRRIERKK  120
GVPWTEEEHR LFLIGLQKLG KGDWRGISRN FVTSRTPTQV ASHAQKYFIR QSSATRRKRR  180
SSLFDIVADT AADASHPLPD EQFMLPPRAM ESDKEQLAPS ATKAIETDFA DSLPSLDLSL  240
KSDFESMETV PSEPVQETKP NTATSEIPPA FPAFFPAYIP VPYPFWPSNA IPVPEDRGPE  300
PSHHQILKPI PTVPKEPVNV DELVGMSQLT LAEAGSGHFE PSPLSLKLTA EPSRQSAFHA  360
STPGKSSEIT KGETAPIQAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.16e-76MYB_related family protein