PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU00278.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 369aa MW: 42487 Da PI: 9.8136

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU00278.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.5e-05	119	142	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C Cg++F +++ L++H + H PHU00278.1 119 YICRVCGRRFYSNEKLVNHFKQiH 142 89*****************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MMKYVKVGAF IHAIHSYNRF CHFESKPHLG FGSLDSQVRA SVGIFWDLDN KPPKSFPPYD 60 AATKLKKAAS EFGVVRFTVA YANRQAFSYV PPLVREQRKE RKALNLLEKS GVVKVEEPYI 120 CRVCGRRFYS NEKLVNHFKQ IHEREHKKRL SKIESARGKM RVKLVAKYAM KMDKYKGAVR 180 DVLIPKVGYG LADELKRAGF WVRTVENKPQ AADIALRNHL VDVMDKRMVD YVVLVSDDSD 240 FVEVLKEARL RCLKTVVVGD SNDGALKRIA DAAFSWQEIM MGKAKKEAVS VVGRWKDRDV 300 LKRLEWTYDP EVEKKLYYSE VESDDSDGFF SGEEDVGASV LKENAGAWWK LDSHSAYFWL 360 QLHPYKNEI

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MMKYVKVGAF IHAIHSYNRF CHFESKPHLG FGSLDSQVRA SVGIFWDLDN KPPKSFPPYD  60
AATKLKKAAS EFGVVRFTVA YANRQAFSYV PPLVREQRKE RKALNLLEKS GVVKVEEPYI  120
CRVCGRRFYS NEKLVNHFKQ IHEREHKKRL SKIESARGKM RVKLVAKYAM KMDKYKGAVR  180
DVLIPKVGYG LADELKRAGF WVRTVENKPQ AADIALRNHL VDVMDKRMVD YVVLVSDDSD  240
FVEVLKEARL RCLKTVVVGD SNDGALKRIA DAAFSWQEIM MGKAKKEAVS VVGRWKDRDV  300
LKRLEWTYDP EVEKKLYYSE VESDDSDGFF SGEEDVGASV LKENAGAWWK LDSHSAYFWL  360
QLHPYKNEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12240.1	1e-132	C2H2 family protein