PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU00029.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 353aa MW: 39450.8 Da PI: 4.2153

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU00029.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.2	3.3e-19	55	108	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++++LA++lgL+ rqV vWFqNrRa++k PHU00029.1 55 KKRRLSVEQVKALEKNFEVENKLEPERKAKLAQELGLQPRQVAVWFQNRRARWK 108 56689************************************************9 PP
2	HD-ZIP_I/II	128.3	3.1e-41	54	145	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrls eqvk+LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlE+dy++Lk+++d+lk++ e+L+ ++e+L +e+ PHU00029.1 54 EKKRRLSVEQVKALEKNFEVENKLEPERKAKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYNVLKANFDSLKHNYESLKLDNEALIKEIC 145 69*************************************************************************************99885 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MKRLGSSDSL GALMSMCPST TDDQNHVYSS RDFQSMLEGL DEEGCVEESG HVSEKKRRLS 60 VEQVKALEKN FEVENKLEPE RKAKLAQELG LQPRQVAVWF QNRRARWKTK QLERDYNVLK 120 ANFDSLKHNY ESLKLDNEAL IKEICELKSK VYGGENGESR GAVVVVKEEA MESEDDDKLM 180 NEQNKHPNDG NNSNNNLLDE EEEEDQEDDE AINATNVAST IFADFNKDGS SDSDNSSSIL 240 NEDSSPNAAI SSSGAFLISN DGSGGGCGVG CSSSSSLHFC FNFTESSSKS ILGDTQANSC 300 YTYQPTTTTT QYNVKMEEHN FFNTEESCST FFSDEQAPTL QWYCPEDWNF KDS

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MKRLGSSDSL GALMSMCPST TDDQNHVYSS RDFQSMLEGL DEEGCVEESG HVSEKKRRLS  60
VEQVKALEKN FEVENKLEPE RKAKLAQELG LQPRQVAVWF QNRRARWKTK QLERDYNVLK  120
ANFDSLKHNY ESLKLDNEAL IKEICELKSK VYGGENGESR GAVVVVKEEA MESEDDDKLM  180
NEQNKHPNDG NNSNNNLLDE EEEEDQEDDE AINATNVAST IFADFNKDGS SDSDNSSSIL  240
NEDSSPNAAI SSSGAFLISN DGSGGGCGVG CSSSSSLHFC FNFTESSSKS ILGDTQANSC  300
YTYQPTTTTT QYNVKMEEHN FFNTEESCST FFSDEQAPTL QWYCPEDWNF KDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	55	84	KKRRLSVEQVKALEKNFEVENKLEPERKAK
2	103	111	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	2e-67	HD-ZIP family protein