PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT99881.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 266aa MW: 30452.5 Da PI: 6.5263

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT99881.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.2	1.1e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n++ rqvtfskRr g++KKAeELSvLCda+va+iifss+gkl++yss PHT99881.1 9 KKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSNGKLFDYSS 59 68***********************************************96 PP
2	K-box	53.2	1.3e-18	92	173	19	100
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++++L kei++ + +R++ Ge+++ L+++eLqqLe+ Le++l+++ +kK + ++++i++lq+k +l een++Lr++++e PHT99881.1 92 SNYSRLSKEISEKSHRLRQMRGEEIQGLNIEELQQLEKSLETGLSRVIEKKGDKIMREINQLQHKGIQLMEENEKLRQQVME 173 6799***************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MAREKIQIKK IDNSTARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS NGKLFDYSSS 60 SMKQILERRD LHSKNLEKLD QPSLELQLVE NSNYSRLSKE ISEKSHRLRQ MRGEEIQGLN 120 IEELQQLEKS LETGLSRVIE KKGDKIMREI NQLQHKGIQL MEENEKLRQQ VMEISSNKNN 180 NGYKNPIVFE PEIEFNYEEG QSSESVTNPC NSTGPPQDDD SSDTSLKLGI HIEACLIRIH 240 ASKTHSGKAL PIKDFTCPEL EFKISD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	1e-115	MIKC_MADS family protein