PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT99148.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GATA

Protein Properties

Length: 537aa MW: 59532.6 Da PI: 7.9696

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT99148.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	36.1	8.7e-12	7	34	8	35
GATA 8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35 TplWR+gp ++ LCnaCG ++r kg+ PHT99148.1 7 GTPLWRNGPPEKPILCNACGSRWRTKGT 34 5******66666*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence
MSNYAAGTPL WRNGPPEKPI LCNACGSRWR TKGTLLNYTP LHARPESDDL EDYRMSRIKN 60 MSLKSKEAKV LKQKQNYDNT VVKTPDYNQG FLKGLDEDTS NRSSSGSAIS NTESSAQFGS 120 TEASDLTGPA QSNKWEAMVP SRKRTCISRS KQSSVEKLTK DLCTILHEQQ SSYFSGSSEQ 180 DLLFESHKPM VSVEIGHGSV LIRHPNSIGR EEESEASSLP VNNKLHNVNE AYSRLSTPPV 240 NINRGVNLPN LGTERTKKPN SQGMEQHQIK RDKDHFEKLH ILGHHSSPLC HIDLKDVLNY 300 EEFVRHISSD EQQQLLKYLA PVDSFAPPDS LKSMFESSHF EENLSSFQKL LAEGVFDSSL 360 SGVTIQDSRT LKRLILCYLT KSKWVEKYNL LKDTKCRSST SGSEVAGGAN AIGTGHSVNV 420 KRPLEGHHPT YTDHFASGAK KAMKSPKKVV MNSSYEQKEL VDNNSSCFSP KCLFPLPSNS 480 SPVLDSLRFE NDQDVLLDVP SSSSFAQAEL LLPTSSFAAQ ASTSSSSVYP HLVRPSC

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence

MSNYAAGTPL WRNGPPEKPI LCNACGSRWR TKGTLLNYTP LHARPESDDL EDYRMSRIKN  60
MSLKSKEAKV LKQKQNYDNT VVKTPDYNQG FLKGLDEDTS NRSSSGSAIS NTESSAQFGS  120
TEASDLTGPA QSNKWEAMVP SRKRTCISRS KQSSVEKLTK DLCTILHEQQ SSYFSGSSEQ  180
DLLFESHKPM VSVEIGHGSV LIRHPNSIGR EEESEASSLP VNNKLHNVNE AYSRLSTPPV  240
NINRGVNLPN LGTERTKKPN SQGMEQHQIK RDKDHFEKLH ILGHHSSPLC HIDLKDVLNY  300
EEFVRHISSD EQQQLLKYLA PVDSFAPPDS LKSMFESSHF EENLSSFQKL LAEGVFDSSL  360
SGVTIQDSRT LKRLILCYLT KSKWVEKYNL LKDTKCRSST SGSEVAGGAN AIGTGHSVNV  420
KRPLEGHHPT YTDHFASGAK KAMKSPKKVV MNSSYEQKEL VDNNSSCFSP KCLFPLPSNS  480
SPVLDSLRFE NDQDVLLDVP SSSSFAQAEL LLPTSSFAAQ ASTSSSSVYP HLVRPSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.2	1e-130	GATA family protein