PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT98484.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 355aa MW: 39851.3 Da PI: 6.9249

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT98484.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.2	1.6e-12	70	111	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T++E+el++++++ G++ W+ Ia+ + gRt++++k+ w++ PHT98484.1 70 NFTPQEEELIIKLHATIGSR-WSIIAQQLA-GRTDNDVKNLWNT 111 89****************.*****.********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MGRPPCCNDK VRNRKCNWIE DDSNTSTYVS NKHGIGNWAT MSKKSGYGRS GRIQKQRWSN 60 RLKPDLKQDN FTPQEEELII KLHATIGSRW SIIAQQLAGR TDNDVKNLWN TKLKKKLSAM 120 GIDPVTHKPF SQILTDYGNI GGFPKARTRF VSLNRELKGA FMSRPEQLQH SLQSFQNFHS 180 LCVKLPKTEA SEECFFSNNR DSSNVNQPPV DLLSELQAIK YVTEASNYNS PKAIFSHHPN 240 QMTDCSTSSP LSSSSSSSAS HSLNENQVNW CDYLLDDAFI PSNFKDQEDE LTIEEKLVSS 300 GAQDGSNNVP STRDFQASLS TKGTSSSSSS FVEAMLECEN EMFLNFPGLS EDPFY

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MGRPPCCNDK VRNRKCNWIE DDSNTSTYVS NKHGIGNWAT MSKKSGYGRS GRIQKQRWSN  60
RLKPDLKQDN FTPQEEELII KLHATIGSRW SIIAQQLAGR TDNDVKNLWN TKLKKKLSAM  120
GIDPVTHKPF SQILTDYGNI GGFPKARTRF VSLNRELKGA FMSRPEQLQH SLQSFQNFHS  180
LCVKLPKTEA SEECFFSNNR DSSNVNQPPV DLLSELQAIK YVTEASNYNS PKAIFSHHPN  240
QMTDCSTSSP LSSSSSSSAS HSLNENQVNW CDYLLDDAFI PSNFKDQEDE LTIEEKLVSS  300
GAQDGSNNVP STRDFQASLS TKGTSSSSSS FVEAMLECEN EMFLNFPGLS EDPFY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	2e-43	MYB family protein