PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT98434.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 628aa MW: 72743.8 Da PI: 9.1112

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT98434.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.6	2.4e-07	422	461	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eE e+ + k++G++ Wk a ++g + + ++k+ w+ PHT98434.1 422 KWTEEEYEIVRKFQKEHGNN-WKVLADELG--KHRFHVKDTWR 461 8***************99.******9..56777887776 PP

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence
MDQGDEKEDM LRKLEKKSKK SNKNAATSGL GGESDGCEVK KKKKRKGGEH PGKCNKDNDE 60 DVVKYIERKK NNKLKKSCLN EPPLDFKISA PASASEMRDS EKVVETLGEI SSGDVVDEIR 120 RKKKSKKNIK TTNVVGVANT DIEAKTDDCD LKRKKEKKHG KHSEKFNEDS DEVALRIVEG 180 KKSRKLKKSR VAEQEKMHDT EDVQEDIVAE VDEGDISSPI KIEEKNRTDN GNIKKRKKVK 240 SGHSSEDPTH EIEEKSRTDN GNIKKRKKVK SGHSSEDPTH EIEEENRTDN GNIKKKKKVK 300 SGHSSEDPTH EKSAKKVRFS GHVQIFPSSD DPSDEKHEIE DENLLRGKRF SKLEDEIVKE 360 AVHKYVDFHN LGEEGLKKIL NSRSYPEIRG CWKEIGSAIP YRPYTAVYYR AQILFRRSES 420 RKWTEEEYEI VRKFQKEHGN NWKVLADELG KHRFHVKDTW RRIKRPNQNK GQWTQEEYQS 480 LFDLVNTDLR LRLSEEKRSK YGMLRDNIAW TAISDKLSTR TEANCCLKWY DQLTSPMVAK 540 GEWADVDDYR LVDALFELDA SCIEDVDWDN LLDHRPGEIC RKRWNQMVLH IGKLKNSSFA 600 EQIEVLAKRY RPDFAEVREA WDNKPVVP

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence

MDQGDEKEDM LRKLEKKSKK SNKNAATSGL GGESDGCEVK KKKKRKGGEH PGKCNKDNDE  60
DVVKYIERKK NNKLKKSCLN EPPLDFKISA PASASEMRDS EKVVETLGEI SSGDVVDEIR  120
RKKKSKKNIK TTNVVGVANT DIEAKTDDCD LKRKKEKKHG KHSEKFNEDS DEVALRIVEG  180
KKSRKLKKSR VAEQEKMHDT EDVQEDIVAE VDEGDISSPI KIEEKNRTDN GNIKKRKKVK  240
SGHSSEDPTH EIEEKSRTDN GNIKKRKKVK SGHSSEDPTH EIEEENRTDN GNIKKKKKVK  300
SGHSSEDPTH EKSAKKVRFS GHVQIFPSSD DPSDEKHEIE DENLLRGKRF SKLEDEIVKE  360
AVHKYVDFHN LGEEGLKKIL NSRSYPEIRG CWKEIGSAIP YRPYTAVYYR AQILFRRSES  420
RKWTEEEYEI VRKFQKEHGN NWKVLADELG KHRFHVKDTW RRIKRPNQNK GQWTQEEYQS  480
LFDLVNTDLR LRLSEEKRSK YGMLRDNIAW TAISDKLSTR TEANCCLKWY DQLTSPMVAK  540
GEWADVDDYR LVDALFELDA SCIEDVDWDN LLDHRPGEIC RKRWNQMVLH IGKLKNSSFA  600
EQIEVLAKRY RPDFAEVREA WDNKPVVP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	46	KKKKKRK
2	40	73	KKKKKRKGGEHPGKCNKDNDEDVVKYIERKKNNK
3	41	46	KKKKRK
4	120	153	KKKKKRKGGEHPGKCNKDNDEDVVKYIERKKNNK
5	121	154	KKKKKRKGGEHPGKCNKDNDEDVVKYIERKKNNK
6	123	156	KKKKKRKGGEHPGKCNKDNDEDVVKYIERKKNNK
7	152	185	KKKKKRKGGEHPGKCNKDNDEDVVKYIERKKNNK
8	234	267	KKKKKRKGGEHPGKCNKDNDEDVVKYIERKKNNK
9	234	238	KKRKK
10	235	268	KKKKKRKGGEHPGKCNKDNDEDVVKYIERKKNNK
11	264	297	KKKKKRKGGEHPGKCNKDNDEDVVKYIERKKNNK
12	264	268	KKRKK
13	265	298	KKKKKRKGGEHPGKCNKDNDEDVVKYIERKKNNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	1e-134	MYB_related family protein