PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT98432.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 580aa MW: 68396 Da PI: 8.8776

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT98432.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.8	2.2e-07	219	258	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eE e+ + k++G++ Wk a ++g + + ++k+ w+ PHT98432.1 219 KWTEEEYEIVRKFQKEHGNN-WKVLADELG--KHRFHVKDTWR 258 8***************99.******9..56777887776 PP

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence
MERYLFKRRA DEKERKKHGK HSEKFSEDCD EVALRIVEGK KSRKLKKSRV AEQEKMHDTE 60 DVQEDIVAEV DEGDISSPIK IEEKNRTDNG NIKKRKKVKS GHSSEDPTHE IEEKNRTDNG 120 NIKKRKKVKS GHSSEDPTHE IEEXXXXXXX XXXXXXXXXX XXXXXXXXXE EGLKKILNSR 180 SYPEIRGCWK EIGSAIPYRP YTAVYYRAQI LFRRSESRKW TEEEYEIVRK FQKEHGNNWK 240 VLADELGKHR FHVKDTWRRI KRPNQNKGQW TQEEYQSLFD LVNTDLRLRL SEEKRSKYGM 300 LRDNIAWTAI SDKLSTRTEA NCCLKWYDQL TSPMVAKGEW ADVDDYRLVD ALFELDASCI 360 EDVDWDNLLD HRPGEICRKR WNQMVLHIGK LKNSSFAEQI EVLAKRYRPD FAEFSEDCDE 420 VALRIVEGKK SRKLKKSRVA EQEKMHDTED VQEDIVAEVD EGDISSPIKI EEKNRTDNGN 480 IKKRKKVKSG HSSEDPTHEI EEKNRTDNGN IKKRKKVKSG HSSEDPTHEI EEENRXQEQK 540 HTIHWKNSRN MRNRRGILAD LDQGKLSLKR NIRRAPDLVF

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence

MERYLFKRRA DEKERKKHGK HSEKFSEDCD EVALRIVEGK KSRKLKKSRV AEQEKMHDTE  60
DVQEDIVAEV DEGDISSPIK IEEKNRTDNG NIKKRKKVKS GHSSEDPTHE IEEKNRTDNG  120
NIKKRKKVKS GHSSEDPTHE IEEXXXXXXX XXXXXXXXXX XXXXXXXXXE EGLKKILNSR  180
SYPEIRGCWK EIGSAIPYRP YTAVYYRAQI LFRRSESRKW TEEEYEIVRK FQKEHGNNWK  240
VLADELGKHR FHVKDTWRRI KRPNQNKGQW TQEEYQSLFD LVNTDLRLRL SEEKRSKYGM  300
LRDNIAWTAI SDKLSTRTEA NCCLKWYDQL TSPMVAKGEW ADVDDYRLVD ALFELDASCI  360
EDVDWDNLLD HRPGEICRKR WNQMVLHIGK LKNSSFAEQI EVLAKRYRPD FAEFSEDCDE  420
VALRIVEGKK SRKLKKSRVA EQEKMHDTED VQEDIVAEVD EGDISSPIKI EEKNRTDNGN  480
IKKRKKVKSG HSSEDPTHEI EEKNRTDNGN IKKRKKVKSG HSSEDPTHEI EEENRXQEQK  540
HTIHWKNSRN MRNRRGILAD LDQGKLSLKR NIRRAPDLVF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	97	KKRKK
2	93	129	KKRKKVKSGHSSEDPTHEIEEKNRTDNGNIKKRKKVK
3	94	130	KKRKKVKSGHSSEDPTHEIEEKNRTDNGNIKKRKKVK
4	123	127	KKRKK
5	482	486	KKRKK
6	482	518	KKRKKVKSGHSSEDPTHEIEEKNRTDNGNIKKRKKVK
7	483	519	KKRKKVKSGHSSEDPTHEIEEKNRTDNGNIKKRKKVK
8	512	516	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	1e-112	MYB_related family protein