PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT97972.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 416aa MW: 45066.3 Da PI: 7.4318

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT97972.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132.4	4.2e-41	93	242	2	124
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + PHT97972.1 93 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqlrssyfnhp 191 789******************************************************************999877777777775555566667788888 PP TCP 89 ................................kaaksaakskksqksaasalnlakesrakararare 124 + + + ++ +ak+ +r PHT97972.1 192 nfslsqrrglfqglglssdrsattllnfqtgnS---------------N--PSSLHQFQAKQEMRDSS 242 888999999999999865544444444444421...............2..33333333333333222 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MEGGGGDDHL HLHHHNQHQH QHHHQQYRPN NFPFQLLEKK EDEPCSSSSA ANNNNYPSLA 60 ISPSDTNTNI NPNSDNLQIT VASNTEITPK KPPPKRTSTK DRHTKVDGRG RRIRMPALCA 120 ARVFQLTREL GHKSDGETIE WLLQQAEPAV IAATGTGTIP ANFTSLNISL RSSGSSMSVP 180 SQLRSSYFNH PNFSLSQRRG LFQGLGLSSD RSATTLLNFQ TGNSNPSSLH QFQAKQEMRD 240 SSLDLTETSI EESLNRKRRQ DLDLQQQNEQ QMGNYLLQSS SSGTMPTSHS SIPANFWMLT 300 NNNTQVLGGD PVWTFPSVNN SGAAAAALYR STMSSGLHFM NFPTPVALLP TQQFGGGGGG 360 GNGGNTLGGE GQLGMVTGLN PYRPCSGVSE SQASGSHSHH GGGTDDRHDS TSHHNS

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MEGGGGDDHL HLHHHNQHQH QHHHQQYRPN NFPFQLLEKK EDEPCSSSSA ANNNNYPSLA  60
ISPSDTNTNI NPNSDNLQIT VASNTEITPK KPPPKRTSTK DRHTKVDGRG RRIRMPALCA  120
ARVFQLTREL GHKSDGETIE WLLQQAEPAV IAATGTGTIP ANFTSLNISL RSSGSSMSVP  180
SQLRSSYFNH PNFSLSQRRG LFQGLGLSSD RSATTLLNFQ TGNSNPSSLH QFQAKQEMRD  240
SSLDLTETSI EESLNRKRRQ DLDLQQQNEQ QMGNYLLQSS SSGTMPTSHS SIPANFWMLT  300
NNNTQVLGGD PVWTFPSVNN SGAAAAALYR STMSSGLHFM NFPTPVALLP TQQFGGGGGG  360
GNGGNTLGGE GQLGMVTGLN PYRPCSGVSE SQASGSHSHH GGGTDDRHDS TSHHNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	5e-49	TCP family protein