PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT97463.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 557aa MW: 59843.7 Da PI: 7.6389

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT97463.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130	2.3e-40	164	269	2	113
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskk 99 ++ k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s + +a++sk+ PHT97463.1 164 PPPKRQTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGS-------SLTAPPSKS 255 56799****************************************************************99966666666666.......233334555 PP TCP 100 sqksaasalnlake 113 +++s +sal+la+ PHT97463.1 256 APHSFHSALALAAA 269 55555555555544 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MELTDLQSNN TNSTSKQQST TPSPPLHHQH QHQHQHQHQQ HQYQILSQHH HQHHQQQQLQ 60 QQQQQHGRSS VPFMSSISIQ QPSAPPGLTN SASPSPAAAA TSASPSTSSP TAQQQQQQPP 120 HLVDASLAIA TRSDSLIDPN KKSQPQQQQL AIQQTQIVPQ PQQPPPKRQT KDRHTKVDGR 180 GRRIRMPAAC AARVFQLTRE LGHKSDGETI EWLLQQAEPA IIAATGTGTI PANFSTLNIS 240 LRSSGSSLTA PPSKSAPHSF HSALALAAAH HTPIPFEEGF SHMLGFHQNP HLLTQNPIAE 300 SLPGGGGGGG NSGDGGGGGQ EGADNYLRKR YREDLFKEEG SSNPQGEASG GSSSPSNKQF 360 KGNSSQLPKS NSSQEGVAGP SSNMLRHTNM MPATGLWAVA PPPSSGTTGS PFWMLPVTAS 420 GSGQTLSAPM ASTSGTTTLE SQMWPFHMSS SNTIQAPLHF MPRFNIPPNL EFQSGRGNPL 480 QLGSMLMQQQ QQQPSQHLGL GMSETNLGML AALNAYSRGG LNINSDHQSH SLEHHHQQQQ 540 PQPQPTDSDN DDPNNSQ

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MELTDLQSNN TNSTSKQQST TPSPPLHHQH QHQHQHQHQQ HQYQILSQHH HQHHQQQQLQ  60
QQQQQHGRSS VPFMSSISIQ QPSAPPGLTN SASPSPAAAA TSASPSTSSP TAQQQQQQPP  120
HLVDASLAIA TRSDSLIDPN KKSQPQQQQL AIQQTQIVPQ PQQPPPKRQT KDRHTKVDGR  180
GRRIRMPAAC AARVFQLTRE LGHKSDGETI EWLLQQAEPA IIAATGTGTI PANFSTLNIS  240
LRSSGSSLTA PPSKSAPHSF HSALALAAAH HTPIPFEEGF SHMLGFHQNP HLLTQNPIAE  300
SLPGGGGGGG NSGDGGGGGQ EGADNYLRKR YREDLFKEEG SSNPQGEASG GSSSPSNKQF  360
KGNSSQLPKS NSSQEGVAGP SSNMLRHTNM MPATGLWAVA PPPSSGTTGS PFWMLPVTAS  420
GSGQTLSAPM ASTSGTTTLE SQMWPFHMSS SNTIQAPLHF MPRFNIPPNL EFQSGRGNPL  480
QLGSMLMQQQ QQQPSQHLGL GMSETNLGML AALNAYSRGG LNINSDHQSH SLEHHHQQQQ  540
PQPQPTDSDN DDPNNSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	6e-53	TCP family protein