PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP07797

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Trihelix

Protein Properties

Length: 464aa MW: 52952.3 Da PI: 6.6009

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP07797	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	90.6	1.7e-28	266	350	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev aLi++r ++e ++++ k++ We+vs+ m++ g++rs+k+Ckekwen+nk+++k ke+ kkr s +s+tc yfdql+ OMP07797 266 RWPRAEVEALIQVRCNLEAKFKEPGTKGAVWEDVSSSMASLGYQRSAKRCKEKWENINKYFRKSKENGKKR-SLQSKTCTYFDQLD 350 8******************************************************************98.89999******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MHPVKYGGHH HLQQQQLMDD DGSSSSSSPV FSISNPHQQQ QQSLFHHHQN LFQQQHSSPI 60 PVTHQLFQHP HQFHPFQQQS EPSVHHNHVH QQQQQQQPFL AVDFKLGLNE NSVKKDATFL 120 HGNHQNVPEN RQPQHQQHSL LNMHMPHCWH PQEDSPIKEP FWKPLNRRED RQCSGEVARE 180 IQGNKYNKVL QQQPGQCTTQ RSKNLDNNKY RHFGELEAIY GLAKGGGETA QAGSGSALTG 240 QSINLPARAI EPFNEFRPLK VDNNGRWPRA EVEALIQVRC NLEAKFKEPG TKGAVWEDVS 300 SSMASLGYQR SAKRCKEKWE NINKYFRKSK ENGKKRSLQS KTCTYFDQLD QLYSRIPIAC 360 PTSPSPLTNS DFEMQQQSDS DFLEAYVPER DIIGTTAQVK ASGSLKLKVS EIMKSSKLDF 420 DGAVGDNEEV HEESNGKDNE SHDNSYLEKE GEQEEDDNDT DMGE

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MHPVKYGGHH HLQQQQLMDD DGSSSSSSPV FSISNPHQQQ QQSLFHHHQN LFQQQHSSPI  60
PVTHQLFQHP HQFHPFQQQS EPSVHHNHVH QQQQQQQPFL AVDFKLGLNE NSVKKDATFL  120
HGNHQNVPEN RQPQHQQHSL LNMHMPHCWH PQEDSPIKEP FWKPLNRRED RQCSGEVARE  180
IQGNKYNKVL QQQPGQCTTQ RSKNLDNNKY RHFGELEAIY GLAKGGGETA QAGSGSALTG  240
QSINLPARAI EPFNEFRPLK VDNNGRWPRA EVEALIQVRC NLEAKFKEPG TKGAVWEDVS  300
SSMASLGYQR SAKRCKEKWE NINKYFRKSK ENGKKRSLQS KTCTYFDQLD QLYSRIPIAC  360
PTSPSPLTNS DFEMQQQSDS DFLEAYVPER DIIGTTAQVK ASGSLKLKVS EIMKSSKLDF  420
DGAVGDNEEV HEESNGKDNE SHDNSYLEKE GEQEEDDNDT DMGE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	3e-36	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OMP07797