PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO96590
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family LBD
Protein Properties Length: 315aa    MW: 35024.2 Da    PI: 6.5552
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO96590genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.72.7e-40171161100
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               aCaaCk++rrkC +dC+lapyfpa+qpk f+n+hklFG+sn+lkllk+l++ ++ +am+s+ y+A+ar   Pv+G+vgvi++l+ q++ l++e +l++++
  OMO96590  17 ACAACKFQRRKCIPDCPLAPYFPADQPKIFQNAHKLFGVSNILKLLKSLDPAQHAEAMRSIKYQANARDMFPVHGCVGVISQLNYQIRLLQEEFHLVNAQ 116
               7**********************************************************************************************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MMMTHKSGKG TGGSSSACAA CKFQRRKCIP DCPLAPYFPA DQPKIFQNAH KLFGVSNILK  60
LLKSLDPAQH AEAMRSIKYQ ANARDMFPVH GCVGVISQLN YQIRLLQEEF HLVNAQLEMY  120
MYRQQYHDPN ISSISMADNV HVPNSQLQLG MPLPAAVTDQ ANTLPLFNQL RHPNYTDSAA  180
ASLSSYSNTN TNTNTNSNNV GNNSSSTSYI HGSNINQHPF VTNNINSSCS MAIQPHHPLS  240
LPLQQEQLVQ DYDEIHHFFD SIDDRQSYIE SKEAYDCSSE ESIMKDTTQS MEHVAENELK  300
SAAACFSLTS VSSIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.13e-39LBD family protein