PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO96472

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HD-ZIP

Protein Properties

Length: 280aa MW: 32095.6 Da PI: 4.8586

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO96472	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	57	110	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k OMO96472 57 KKRRLSIDQVKALEKNFEVENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWK 110 5568999**********************************************9 PP
2	HD-ZIP_I/II	130.6	5.9e-42	56	148	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdy Lk++ydalk + ++Le+e+e+L+++lke OMO96472 56 EKKRRLSIDQVKALEKNFEVENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKTKQLEKDYGILKANYDALKLDYNNLEQENEALTAKLKE 148 69****************************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MKRISSSGSL DALIPICPPK EEKNSKNKQV YSREFQAMLD SLEEEDSLEE AGQSTEKKRR 60 LSIDQVKALE KNFEVENKLE PERKVKLAEE LGLQPRQVAI WFQNRRARWK TKQLEKDYGI 120 LKANYDALKL DYNNLEQENE ALTAKLKELR AKLKEENNSE SSHSVKEDSP KFSQQDLCDN 180 NHDDSNGIVK EDSNVNAQLL ISPSSSSSFQ FNGPSSSSDS SNHQTCSWFQ PFDSRMILGN 240 MFHPSQFVKV EEQCMFAAEE SCNFFSVDQA PTLQWYFTGQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	86	KKRRLSIDQVKALEKNFEVENKLEPERKVK
2	105	113	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	4e-51	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OMO96472