PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO95091

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

GRF

Protein Properties

Length: 562aa MW: 60656.5 Da PI: 8.8753

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO95091	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.2	1.6e-24	209	251	2	44
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e OMO95091 209 LEPGRCRRTDGKKWRCSRDVAPDQKYCERHMHRGRPRSRKPVE 251 69**************************************997 PP
2	QLQ	47.5	5.5e-17	153	187	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT aQ+ +L +Q++++Ky+ ++PvPp+Ll++i+ OMO95091 153 PFTSAQWKELHRQAMIFKYMKDSVPVPPHLLFPIT 187 8********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MSGFSVSDKA AKERSSIEGV DDLGLGVNNN NKVQSSKLLV QPWKKMMMVH HENHHNRPFP 60 PYAIGYGDVD ADGPTSTGNN NNRPKTSNIY DVFPSSVSGS AAAVPSGGAV AVRIMQPFDI 120 SPTTITTISS SNTLLQTAFK SPAGGMAASL EFPFTSAQWK ELHRQAMIFK YMKDSVPVPP 180 HLLFPITGTP SNSALGGVLN LRYSGRGDLE PGRCRRTDGK KWRCSRDVAP DQKYCERHMH 240 RGRPRSRKPV ELSSNKKTRH DNTHSLPSSS SAVLAKNIDA SQSQFVAHPF HQNQTTCFLG 300 KESEKAATFW DLASVSSYHK ETRNADWIMN EELIPLASSD QQWHHLMQNS VFNQNYSNKE 360 SLNLNSYANF NAAEDQRSNH CPLFLNSEIV QKSPEVAGRG FIDAWSQNAN SGAETSVSSN 420 GKLSLSSSLS LSMGVNSIRD KEMGLIHMGL GVNESDQNHE YASKSHLSTW SAPASASTPG 480 GPLAEVLRLS KIATATAAAD GSSNLSSPVT GSGSPTVTAV SSPSGVLQRT LASWSDSSGS 540 SSPTIPSSGA KPEISFMWLK EN

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MSGFSVSDKA AKERSSIEGV DDLGLGVNNN NKVQSSKLLV QPWKKMMMVH HENHHNRPFP  60
PYAIGYGDVD ADGPTSTGNN NNRPKTSNIY DVFPSSVSGS AAAVPSGGAV AVRIMQPFDI  120
SPTTITTISS SNTLLQTAFK SPAGGMAASL EFPFTSAQWK ELHRQAMIFK YMKDSVPVPP  180
HLLFPITGTP SNSALGGVLN LRYSGRGDLE PGRCRRTDGK KWRCSRDVAP DQKYCERHMH  240
RGRPRSRKPV ELSSNKKTRH DNTHSLPSSS SAVLAKNIDA SQSQFVAHPF HQNQTTCFLG  300
KESEKAATFW DLASVSSYHK ETRNADWIMN EELIPLASSD QQWHHLMQNS VFNQNYSNKE  360
SLNLNSYANF NAAEDQRSNH CPLFLNSEIV QKSPEVAGRG FIDAWSQNAN SGAETSVSSN  420
GKLSLSSSLS LSMGVNSIRD KEMGLIHMGL GVNESDQNHE YASKSHLSTW SAPASASTPG  480
GPLAEVLRLS KIATATAAAD GSSNLSSPVT GSGSPTVTAV SSPSGVLQRT LASWSDSSGS  540
SSPTIPSSGA KPEISFMWLK EN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	1e-34	GRF family protein

Link Out ? help Back to Top
Ensembl	OMO95091