PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO95023

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 359aa MW: 40595.7 Da PI: 9.684

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO95023	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57	4.3e-18	17	62	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G +W++Ia++++ gR++k+c++rw++ OMO95023 17 RGHWRPAEDEKLRQLVQQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 62 899***************************.*********996 PP
2	Myb_DNA-binding	60.6	3.3e-19	69	112	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ OMO95023 69 RSPFTEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 112 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MEDSGAASSD DVKTCPRGHW RPAEDEKLRQ LVQQYGAQNW NSIAEKLQGR SGKSCRLRWF 60 NQLDPRINRS PFTEEEEERL LAAHRIHGNK WALIARLFPG RTDNAVKNHW HVIMARKQRE 120 QSKLCGKRSF QDALNNCDSN KLTNSAAFYP RKSRLGFGVL GDSRCTFEFQ QNPSNNNNKD 180 RIFSVSSSST TTSSPSWTFA SSTIMASSNN SSSRRSDHGK DYLWASGSSC YNYSMETSRF 240 LDQSLYNKYH HHSNSNSNAS AYNCSSFRNS SSALIGLQNY RRVVPSPFGY LKLAGDNYQS 300 NNGMMNKELM SFTDNNAPKS TLANIRVSNS QQEQDQDDQS IKHKKDVPFI DFLGVGISS

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MEDSGAASSD DVKTCPRGHW RPAEDEKLRQ LVQQYGAQNW NSIAEKLQGR SGKSCRLRWF  60
NQLDPRINRS PFTEEEEERL LAAHRIHGNK WALIARLFPG RTDNAVKNHW HVIMARKQRE  120
QSKLCGKRSF QDALNNCDSN KLTNSAAFYP RKSRLGFGVL GDSRCTFEFQ QNPSNNNNKD  180
RIFSVSSSST TTSSPSWTFA SSTIMASSNN SSSRRSDHGK DYLWASGSSC YNYSMETSRF  240
LDQSLYNKYH HHSNSNSNAS AYNCSSFRNS SSALIGLQNY RRVVPSPFGY LKLAGDNYQS  300
NNGMMNKELM SFTDNNAPKS TLANIRVSNS QQEQDQDDQS IKHKKDVPFI DFLGVGISS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	3e-63	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO95023